Zingiber officinale (ginger): 121998179
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Entry
121998179 CDS
T08725
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2-like isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121998179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121998179
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121998179
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121998179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
121998179
NCBI-ProteinID:
XP_042408901
LinkDB
All DBs
Position
6A:complement(132422260..132437617)
Genome browser
AA seq
1167 aa
AA seq
DB search
MGSKSKPDYEALRDLFRPHVESFDYFIDEGLEKIFFGIRPEEIVDRITGVKLRISVENPQ
LLPPTKDGRLNEPLYPHECRQARTTYKGCFKASLCCQYDDGVIVRDSINFGYLPIMLKSK
LCHLRGADPQKLVFHKEEATEMGGYFICSGMERLARLLIIQKRNYPLSMVRRSLNNRGPG
YSDKAVVIRCTREDQSSVTLKLYYLENGSARLGFWIRGREFLLPVGIILKALIDTNDHEI
FVSLTCYYNERYQKEKGAVGTQLIGERAQIILDEVRDLSLFTHHHCLKHIGEYFRSVMDG
FETENYITVAEAVLREYIFVNLGSNHDKFNLLIFMLQKLYALVDQTAAPDNIDTLQNQEV
LLPGHLIAICLKEKIQMWLRKARQQILDELAKKERTFDIKSVTQVKKILTKNSAHIGRAI
ESMIKVGRLNAQSGLDLPQREGMTIMAERLNFFRYLSHFRSVHRGAAFTKMRTTSVRKLL
PESWGFLCPVNTPDGEPCGLLNHMTCSCRISSSYDSEGKIKDPLKIRMSILSVLVAIGMT
PLLPKLERAGPPEVLHVLLDGCVVGSITSCQIEKAVAHIRSLKLSALSGIPEDLEVGYVP
LSYGGAYPGLYLFTNTSRFIRPVRNLAHGNDGGNDIELIGPFEQSFMEIRCSDGGDGGRR
EFFPATHEEIHPTGILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFSGQALQYRADLKT
YHLQTPQSPIVRTTSYTKYCMDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGLSRG
HIYQTESIDLAKKHETDRIQEIFARSNTDRNMMFSIDSDGLPYVGQMVHPREPLYSTHNT
LTSTTKPTCLKGSEDAIIDYVSVDGTGSKNYLQKVNIRTRRTRYPIIGDKFSSRHGQKGV
CSQLWPDVDMPFSAVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLHGKFVDATPFP
RSNCNEEDEDKISKSSSVVDELGPMLTAYGFNYHGVEVMHSGVYGTELTCEIFIGPVYYQ
RLRHMVSDKFQVRSTGTVDQITRQPIGGRKRGGGIRFGEMERDAVLAHGAAYLLHDRLHS
CSDYHIADVCSYCGSVLSATIIQPQKKSAREIHGLPPARTPKSYICQACKTSKGMETVAM
PYVFKYLAAEFTAMNIKMDLQLRSQAS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgggatcgaagtcgaagcccgactacgaggcgttgcgagatctcttccgtccgcacgtt
gagtcctttgattactttatcgacgagggtctcgaaaagatattttttggaatacgcccc
gaagaaatcgtcgaccgcataactggagtcaagctcagaatttccgtagagaatccgcag
ttacttcctccaacaaaagacgggcggctaaacgaacccttgtatccccatgagtgtagg
caagccaggacaacttataaaggatgtttcaaagcgtcattgtgctgtcagtatgatgat
ggagtcattgttagagattctatcaactttggatatcttccaataatgctgaagtcaaaa
ctctgccacctgagaggtgctgaccctcaaaagcttgttttccacaaagaggaggcaaca
gaaatgggtgggtacttcatttgctctggaatggagcgacttgcacgacttttaattata
caaaagcgtaattatccgctgagcatggtgcgcagatcattgaataaccgtggaccaggc
tacagtgacaaagcagtggttataagatgtactcgagaagaccaatcttctgtcactctc
aagttatactaccttgaaaatggaagtgcaagacttggattctggataagaggaagagag
tttttgcttccagttggtattattttgaaggctcttattgacacaaatgatcacgaaatc
tttgtgagcttgacatgttattataatgagagataccaaaaagaaaaaggtgctgttgga
actcaacttattggcgaaagggctcaaattattcttgatgaagttagagatttgtcgctt
tttactcaccatcactgcttgaagcatattggagagtacttcagatctgttatggatgga
tttgaaactgagaattatataactgtcgcagaagctgttcttagagaatatatttttgtt
aatcttgggagcaatcatgacaagttcaatttgctaatttttatgctgcagaaactttat
gcacttgtagatcaaactgctgcccctgataatattgatacactgcaaaaccaggaagtt
ctgttgcctggacacttgatagccatttgtcttaaggaaaaaattcaaatgtggttgagg
aaggcaagacaacagattcttgatgagctagcaaagaaggaaagaacctttgatataaaa
agtgtaacacaggtgaagaagattttaaccaagaattctgcacatattgggagggccatt
gagagtatgataaaagttggaagattgaacgcgcaatcaggtctagacttgcctcagaga
gaaggaatgaccattatggcagagaggctcaatttcttccgttatctatctcattttcgt
tctgtacatagaggtgctgcttttacaaaaatgcgtacgacaagtgtacggaaattgctg
ccagagtcttggggcttcctttgccctgtcaatactcctgatggagagccttgtggcttg
ctgaaccatatgacttgttcctgccgcatttcatcttcctatgattcggaaggaaaaatt
aaggaccctctcaagataagaatgtcgatactctctgttttagttgcgattggaatgaca
ccattgcttccgaagcttgagcgtgctggcccacctgaggttcttcatgttcttttggat
ggatgtgttgtaggttccataacttcttgtcaaattgagaaagcagttgcacatatccgg
agcctgaaactttctgccttatcagggattcctgaagatttagaggtaggatatgtacct
ttaagttatggtggagcatatcctggattatacctatttactaacacttccagatttatt
cgaccggttagaaatcttgcccatggcaatgatgggggcaatgatattgaacttattggt
ccgtttgagcagtcttttatggaaataagatgctctgatggtggagatggtggaagaaga
gaattctttcctgcgacacatgaagaaatacacccaacaggaatacttagtgttgttgcc
aatcttactccctggtctgatcacaatcagagcccacgaaacatgtaccagtgccagatg
gccaaacaaacaatggggttttctggccaagctttgcaatatcgtgcagatttgaagaca
tatcatctccagactcctcaatctccaatcgtccggactacttcatatactaagtactgc
atggatgagttcccaacaggcacaaatgcaattgttgcagttttagcttacactggttat
gacatggaagatgccatgatcttgaacaagtcatctgtggaccgtgggctaagtcgtggg
catatttaccagacagagtcaattgacttagcaaagaagcatgagacagaccggatccaa
gaaatatttgctaggagtaacactgatagaaacatgatgttttcaattgactcagatggc
ctaccatacgttggacagatggtacatccacgtgagccattatatagcacacacaatacc
ttaacaagcacaacaaaaccaacttgtttgaaaggttcagaagatgccatcattgactat
gtttctgttgatggtactggctcaaagaactacctgcaaaaggttaacattcgtactcga
cgcaccagatatcctattattggcgataagtttagcagccggcatgggcagaagggtgtt
tgctctcagctatggcctgatgttgacatgccattttctgcagttacagggatgcgacca
gatttaataattaatcctcatgcatttccttcacgaatgactattggaatgcttttggag
tcaattgcagctaagggaggaagcctgcatggaaaatttgttgatgcaactcctttccct
agatcaaattgcaacgaagaagatgaagataagatatccaaatctagctcagtggttgat
gaactaggtccaatgctgactgcttacggtttcaactaccatggagtagaggtaatgcac
agtggagtttatggaacagagctgacttgtgagatttttattgggcctgtttattaccag
cggctccgccacatggtttctgacaaatttcaggtgcgctccactggaactgtggatcag
atcaccaggcaacccattggaggaaggaaacgaggtggaggtattcggtttggagaaatg
gaacgtgatgcagttcttgctcatggagctgcctacctcctacatgacaggctccattcc
tgctccgactaccacatagctgatgtatgttcctactgtggcagtgtactttctgccacc
attatacaaccccaaaagaagtcagcgcgtgaaatccacggtctcccgcctgctagaact
cccaagagctatatatgccaagcttgcaaaaccagcaaaggaatggaaactgtggcgatg
ccctacgtgttcaagtatttggcagcagaattcacagcgatgaacataaaaatggatctt
cagttgaggagccaagcaagctaa
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