Zingiber officinale (ginger): 122002843
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Entry
122002843 CDS
T08725
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122002843
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122002843
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122002843
03036 Chromosome and associated proteins [BR:
zof03036
]
122002843
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122002843
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122002843
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122002843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_2
Vac14_Fab1_bd
HEAT_EZ
Htt_N-HEAT_1
PDS5
Adaptin_N
TAF6_C
CLASP_N
Cnd1
CEP104-like_TOG
DUF3102
Motif
Other DBs
NCBI-GeneID:
122002843
NCBI-ProteinID:
XP_042414127
LinkDB
All DBs
Position
7A:complement(138997279..139003883)
Genome browser
AA seq
587 aa
AA seq
DB search
MAINEPLYPIAVLIDELRNEDIQLRLNSIKKLSTIARALGEERTRKELIPFLSENNDDDD
EVLMGMAEELGGFIPYVGGVEYAHVLLPPLETLCTVEETCVRNKAVESLCRIGAQMKEND
LVDWFAPLVKRLAAGEWFTSRVSSCSIFHIAYPSAPNQLKGELRSIYGHLCQDDMPMVRR
AAATSLGKFSATIEPSNLKSDIMPMFEELTQDDQDSVRLLAVEGCAALGKLLKPEDCVAQ
ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGAEATRTDLVPAYVRLLHDNEAEVRIAAA
GKATKFCQILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLP
VFLSLLKDEFPDVRLSIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI
PLLANQLGVAFFDEKLGSLCMQWLEDKVFTIRDAAANNLKRLAEEFGSEWAMQHIVPQVL
EKISNQHYLYRMTILQAISLLSPVMGAEITCEKLLPVVISLSKDRVPNIKFNVAKVLQSL
VPLVDKSVAEGTIRPCLVELSEDPDVDVRYYAGEALQACDQVIVKSS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggctattaatgagccattgtatccgatagctgtgctgatagatgagttaaggaatgaa
gatattcagctgagactgaactctatcaagaaactctctactattgcacgggcgcttggt
gaggagagaaccagaaaagaattgataccatttcttagtgaaaataatgatgacgatgat
gaagttcttatgggaatggctgaagagttaggtggctttattccatatgttggtggtgtg
gaatatgctcatgtattgcttccaccactggagacattgtgtaccgtagaagaaacttgt
gttaggaacaaggctgttgagtcattgtgtcgtataggggcacaaatgaaggaaaatgac
ttggttgattggtttgcccctctggtgaagaggctagcagctggcgagtggtttacttct
agggtttcatcatgcagtatatttcatattgcttatccaagtgctccaaatcagttgaag
ggggaactgaggtccatatatggacacttgtgtcaagatgacatgcctatggtgaggaga
gcagctgcaacaagtttaggcaaattttctgctacaatagagccaagcaatttgaaatca
gatatcatgccaatgtttgaggaattaacacaagatgatcaagattctgtgcgcctgttg
gctgttgagggttgtgcggcacttggaaaattgctgaaacctgaggattgtgttgcacaa
attcttccagtgattgtcaatttctctcaggataaatcatggcgtgtcagatatatggtt
gcaaatcaattatatgaactttgtgaggctgttggagctgaagctactaggaccgatcta
gtaccagcatatgttcgtcttcttcatgataatgaggctgaagtgcgcatagctgcagct
gggaaggcgacaaagttttgccagatcttaagcccagaactagcaattcaacatattctt
ccttgtgtaaaggaattatcatcagattcttcacagcatgttcggtcagctttagcttca
gtgatcatggggatggcacctgtcttaggaaaggatgcgacaattgaacaacttcttcca
gtttttctttcacttctgaaagatgagtttccagatgttcgactcagtataatcagcaaa
cttgatcaagtaaaccaggttattggaattgatttactgtctcaatcactcttacctgcc
atcgtggagcttgcagaggataggcattggcgagtccggctcgcaataattgaatacatt
cctttgttggcgaatcaactaggtgttgcattcttcgatgaaaaacttggttctctttgt
atgcaatggttggaagataaggtcttcactataagagatgcagctgctaacaacttgaag
cgtcttgcagaagaatttggatcggaatgggccatgcaacacatagttccacaggtgctt
gagaaaatcagtaatcaacattacttgtaccgcatgactattctgcaagctatttctcta
ttatctcctgtcatgggtgctgagatcacatgtgaaaagctattgcctgtagtgatttct
ttgtcgaaggacagggtacccaacatcaaattcaatgtcgcaaaggttttacagtctctt
gttccccttgttgataaatcggtagcggaaggcacgattcgtccatgtctcgttgagctc
agtgaggatcctgatgttgatgttagatattatgcaggcgaagcactacaggcatgtgat
caagtgatagtgaagtcgagttag
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