Zingiber officinale (ginger): 122002955
Help
Entry
122002955 CDS
T08725
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122002955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122002955
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122002955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
DUF3437
AAA_23
Motif
Other DBs
NCBI-GeneID:
122002955
NCBI-ProteinID:
XP_042414294
LinkDB
All DBs
Position
7A:141056916..141068275
Genome browser
AA seq
1277 aa
AA seq
DB search
MVPSRRLSGRSPLVRKQSQITTFFSPGHASKRSPNPSPSADPSPSQPKEKKPRLVISPSS
SPGVNTPPSAAKSGFTEDVVGRRIKVFWPLDKVWYEGRVSSYDALQGKHLVLYDDGEDET
LDLSREKFEWVEEEPPRRLRRLRRLSCTVEKDCNSGNVEDGVGEEDSSGDEEWRKVGGKD
SEEDDSDEVELEDEDDVVVVNSSGRSRTSTGSKKRKKMDVESLDCTKKLNFGGNGGKIMN
KSSPCAAEITSFCSPLTSDKRAQIQTAINNILTSEVAERFERREAEKFRFLRVGRMDAKR
RRPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHIG
VRELDLQYMKGEQPHCGFPEKNYSSNLEKLARKGFRVLVVEQTETPEQLELRRKQMGSKD
KVVKREICAVVSQGTLTEGESLMTNPDTSYILSVTENCKILDDAGKGGVILGLCFVDVST
SKFMIGQFEDDIERSWLRSMLSELRPVEVIKPSRTLSLETERVIRNNTRNPLVNDLKPSV
EFLDAEKTVNEVRKYYSLSALSSSSKSIVTSNNGGDSTGELPDILIELVNSGNDGSCALS
ALGGCLFYLRQAFLDEKLLKCAKFERLPCLAFLNKLQKSYMMLDAAALENLEILENSNGG
LRGTLFAQLDHCVTAFGKRLLKGWLARPLYSTKSIEERQDAIACFKGAGCASALDFRKEL
SRLPDMERLLSRLFSSCEAHGRNANRVILYEDASKKQLQEFIASLRGCETMIQACSSLYS
ILTMTESTLLHHLLTPGKGLPDMSPVIEYFKDAFDWSEANSSGRVIPHAGGDCEYDAACQ
RIKEIESNLAKYLKEQRKTLGNSEINYVTIGKDSYLLEVPESLGGAIPMEYEMQSSKKGY
FRYWTPKIKKLLAELSQAEAEKESALKGILQRLIGQFSEHHTKWRQLVFVTAELDVLISV
AIASNYYEGPTCRPIIREACLENEPYLSARGLGHPVLRSDVLGMGSFVPNDVRIGGIEPR
FILLTGPNMGGKSTLLRQVCLAIVLAQLGADVPAESFQLSPVDRIFVRMGARDNIMAGQS
TFLTELSETAGVLSYATQNSLVALDELGRGSSTSDGQAIAASVLEYLVNVVQCRGLFSTH
YHRLTLEYQKTTKVSICHMACQVGMVEGVEEVTFLYRLTPGSCPKSYGVNVARLAGLPLS
VLQKAAKKSNDFENDNQKGHTATERLISDEKTNAETTLIKELLSVVETWNLRRDSQAVNL
SLLSNIQQRAKSLVPST
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggtgccttcccgccgccttagcggtcgctcgccgcttgttcggaagcagagccagatc
accaccttcttctctcccggccacgcttccaagcgaagccctaatcccagcccaagtgcc
gatccctctccgtcccaacccaaggagaagaagccgcggctcgtgatctccccttcctcc
tctcccggtgtcaacactcctccctctgccgccaagagtggcttcacggaggatgtggtc
ggtaggcggatcaaagtcttctggccccttgacaaggtctggtacgaagggagggtctct
tcctacgatgctttgcaagggaagcacctggtcctgtatgatgacggagaggatgagacg
cttgatcttagcagagagaagtttgagtgggtggaggaggagccgccaagaaggctccgt
aggctgaggcggttgtcgtgcacggtggagaaggattgtaactcagggaatgtggaggat
ggggttggcgaggaggattctagtggagacgaggaatggagaaaggttgggggaaaggac
tcagaggaagatgactcagatgaggtggaattggaggatgaggacgacgtggttgtggtg
aactcgagtggccggtccaggacatctacaggttcaaagaaaaggaagaagatggacgtt
gaaagcttagattgtactaaaaaattaaattttggtggaaatggagggaagattatgaat
aaatcctccccatgcgcagcggaaattacttccttttgctcacccttgactagtgataag
agggcacaaatccagactgctattaacaacattctaacttctgaagtagccgaacggttt
gagagacgagaagcagagaagttcagattcttgcgggtagggcgtatggatgctaaaagg
agacgtcctggagatgaaaactatgatccaaaaactctttatttgccacctgaatttttg
aagaccttgtcaggtggacagaggcaatggtgggaattcaagtcaaagcatatggataag
gttttattcttcaagatggggaagttctatgaattgtttgagatggatgctcatattggc
gttcgagaacttgatttgcaatatatgaagggggaacaacctcattgtgggtttccagag
aagaactattcctcgaatttggagaaattggctagaaagggtttccgtgtacttgttgtg
gagcaaacagagactccagaacaacttgaacttcgccgtaaacagatgggttcgaaggac
aaggttgtcaaacgtgaaatatgtgcagtagtttcacaaggcacactgactgaaggagaa
tcacttatgacaaatcctgatacatcttatattttatcagtcactgaaaattgcaaaatt
cttgatgacgctggtaaaggaggtgttattctaggtctttgctttgttgatgtttccaca
agcaagttcatgattggacaatttgaagacgatatagaacggtcttggttgcggtcaatg
ttgtctgaattgaggcctgtagaagtcataaaaccttcaaggacactcagcctagagact
gaaagagtcataaggaataatacacgaaatccattagttaatgatttaaagccttctgta
gagttcttggacgctgaaaaaactgttaatgaggtcaggaagtattatagcctatcagcg
ctttcttcatcatcaaaaagtattgtcacttctaataatggaggggatagtacgggtgag
cttccagatatattaattgaactagtgaattctggcaatgatggttcatgtgctctttcg
gctcttggtggctgccttttttacttacggcaagcttttctagatgaaaaattgcttaag
tgtgctaaatttgagcgacttccatgcttggctttcttgaataaactccaaaagtcatat
atgatgcttgatgcagctgcccttgaaaaccttgagatactggagaacagtaatggaggc
cttcgaggaacactatttgcccaactggatcattgtgttacagcatttggaaaaaggtta
cttaaaggatggcttgcgaggccactttatagcacaaaatcaattgaagaacgtcaagat
gctatagcatgcttcaagggtgctggttgtgcatccgctcttgatttccgaaaagaactt
tcaagacttccagatatggagcgtttactttcacgcctattctcgagttgtgaggctcat
ggaaggaatgccaatagagttattctttatgaggacgcatcaaagaaacagcttcaagaa
tttattgcttcccttcgtggatgtgaaacaatgatccaagcctgttcttctctgtacagt
atattgaccatgacagaatctactttgcttcatcatttattgactccagggaaaggccta
cctgacatgtctccagtgatagagtatttcaaggatgcttttgattggtcagaagctaac
agctctgggcgtgttattcctcatgctggaggtgattgtgagtatgatgctgcttgtcag
aggattaaggaaattgaatctaacttggccaaatatttgaaggaacaacgtaagacacta
ggaaattcagagataaattatgttacaattgggaaagattcataccttcttgaggtacct
gagagtttaggaggagctattccaatggaatatgagatgcagtcatcaaaaaaggggtat
ttccggtattggacaccaaaaataaaaaaattgttagcagaactctctcaagctgaggca
gagaaagagtcagcacttaaaggcattctccagaggctaattggacaatttagtgaacat
cataccaaatggaggcagttggtattcgtaacagcagagctagatgttttaattagtgtg
gcaattgcaagcaattactacgagggaccaacgtgtcggcccatcatcagagaagcttgt
cttgaaaatgaaccatatttgtctgctagaggtcttggacatcctgttcttcggagcgat
gtcttaggaatgggttcttttgttccaaatgatgtaagaattggtggcatagaacctaga
tttatccttctcacaggtccaaatatgggtggtaaatcaacacttcttcgccaagtttgt
ttagctatagttttggcccagctaggggcagatgttcctgcagaaagttttcagctctcg
cctgttgaccgcatcttcgttcgaatgggtgctagagataatattatggcagggcaaagt
acatttttgacggaactttcagaaactgctggcgtactgtcgtatgctactcaaaattct
cttgtagcactagatgagcttgggaggggctcatcaacttccgatgggcaagctattgcg
gcatctgttctcgagtatcttgtcaatgtagtgcaatgtcgcggactgttttctactcat
tatcaccgattgacactagaatatcagaagactactaaggtttcaatatgccatatggct
tgccaagtcggcatggttgaaggcgtggaagaagttacttttctttacaggttaacgccc
ggttcatgtcccaagagttacggtgttaatgttgctcgtttagcgggattaccattgtca
gtgcttcaaaaggccgccaagaagtctaacgatttcgagaatgataaccagaagggccat
actgcgacggaacggctgatttcagacgagaagacaaacgcggaaacaactcttattaaa
gagttgctctctgtggtagagacctggaatctgcgccgagattctcaagctgtaaacctg
agcctactcagtaacatccaacaaagagcaaagtcactagtgccgagcacataa
DBGET
integrated database retrieval system
