Zingiber officinale (ginger): 122027822
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Entry
122027822 CDS
T08725
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03020
RNA polymerase
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122027822
09124 Replication and repair
03420 Nucleotide excision repair
122027822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122027822
03400 DNA repair and recombination proteins [BR:
zof03400
]
122027822
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122027822
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122027822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
122027822
NCBI-ProteinID:
XP_042442764
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All DBs
Position
10A:complement(97120419..97125186)
Genome browser
AA seq
333 aa
AA seq
DB search
MASEKMLGGGASRTSYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAI
DLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSV
RCDSDQTMDVTSADLQSTNPRVCPVDVAIASAMSADPGGYESPEQKGILIVKLRRGQELR
LRAIARKGIGKDHAKWSPAATVTFMYEPQIHINEELMETLTLEEKRSWVESSPTKVFGID
PNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVEIYAKEDSFIFTIESTGAIKASQMLIN
AIDVLKQKLDAVRLQDEASDMNELTSHLGIQSI
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgagaagatgttgggcggcggggcttcgcggacgtcctatcagcggtttccg
aaggtgcggatccgcgagatgaaggacgactacctcaagttcgagttgcgggacaccgac
gtcagcatcgccaacgccctccgccgcgtcatgatcgccgaggtgcccaccgtcgccatc
gacctcgttgagatcgagtccaactcctctgtcctcaacgacgagttcctcgcccaccgc
ctcggcctcatccctctcaccagcgacgacgccatgacgatgcgcttttcccgtgactgc
gacgcctgcgacggggacggccagtgcgagttctgctccgtcgagttcttcctaagcgtc
cggtgcgactctgaccagacgatggacgtcaccagcgccgacctccagagcaccaatccc
cgcgtctgccccgtcgatgtggctatcgcgagcgctatgtcagccgatcccggcggctac
gaatcccccgagcaaaagggtatactcattgtgaaattacgccgtgggcaagaactaaga
cttagggctattgctagaaaagggattggtaaggatcacgctaaatggtcacctgctgca
actgttacatttatgtatgagccacagatccatataaatgaggaattgatggaaacattg
acgcttgaagagaaacgaagctgggttgagagcagtcctacaaaagtttttggcattgat
ccaaatactcaacaggttgtagttattgactcagaggcttatacatacgacgatgaagtc
ctcaagaaatctgaagctatggggaaaccaggccttgtcgagatttatgccaaagaagac
agcttcatattcaccattgaatcaacaggtgccatcaaggcttcacaaatgctcatcaac
gcgattgacgtcctgaagcagaagctggacgcggtgcgcttacaagatgaggcatccgat
atgaatgaactgacttcgcacctcggaattcagtcaatatag
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