Zingiber officinale (ginger): 122030920
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Entry
122030920 CDS
T08725
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03020
RNA polymerase
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122030920
09124 Replication and repair
03420 Nucleotide excision repair
122030920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122030920
03400 DNA repair and recombination proteins [BR:
zof03400
]
122030920
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122030920
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122030920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
RNA_pol_L_2
Motif
Other DBs
NCBI-GeneID:
122030920
NCBI-ProteinID:
XP_042445894
LinkDB
All DBs
Position
11A:7503011..7507670
Genome browser
AA seq
332 aa
AA seq
DB search
MASEKMGGGLRTSYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDL
VEIEINSSVLNDEFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRC
DSDQTLDVTTADLQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLR
AIARKGIGKDHAKWSPAATVAFMYEPQIHINEELMETLTLEEKQAWVESSPTKVFVIDPN
TQQVEVNDPEAYTYEDEVLKKAEAMGKPGLIEIFPKENSFIFTVESTGAIKASQMLLNAI
NVLKQKLDDIRCSHDDASDMNELTSHLGIQSI
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgagaagatgggcggcggtttgcggacgtcttaccagcggttcccgaaagtc
cacatccgcgagatgacggacgactacctcaagttcgagctgcgcgacaccgacgcgagc
atcgcgaacgccctccgccgcgtcatgatcgccgaggtgcccaccatcgccatcgacctc
gtcgagatcgagatcaactcctccgtgctcaacgacgagttcatctcccaccgcctcggc
ctcatccccctcaccagcgacgacgccatgtcgatgcgcttctcccgcgactgtgacgcc
tgcgacggcgatggccagtgcgagttctgctccgtcgagttcttcctcagtgtccgatgc
gactccgaccagacgctcgacgtcaccaccgccgacctccagagcaccaacccccgcgtc
tgccccgtcaatgtgactattgcgagcgctatgtcaagcgatcgcgagggatgcgagtcc
tccgagcaaaagggcatactcattgtgaaattacaccgtgggcaagagctaagacttcga
gctattgctagaaaagggattggcaaggatcacgccaaatggtcacctgctgcaactgtt
gcatttatgtatgagccacagatccatataaatgaggaattgatggaaacattgacgctt
gaagagaaacaagcctgggttgagagcagccctacaaaagtttttgtcattgatccaaat
actcaacaggtggaagttaacgacccagaggcctatacatacgaagatgaagtcctcaag
aaagcggaagctatggggaaaccaggcctcatcgagatttttcctaaagaaaacagtttc
atattcaccgttgaatcaaccggtgccatcaaggcttcacagatgctcctcaatgcgatc
aacgttctgaagcagaagttggatgacatccgctgctcgcatgatgatgcatccgacatg
aacgaactaacttcacacctgggaattcagtcgatctag
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