Zingiber officinale (ginger): 122036256
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Entry
122036256 CDS
T08725
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2-like isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122036256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122036256
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122036256
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122036256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
122036256
NCBI-ProteinID:
XP_042451459
LinkDB
All DBs
Position
Unknown
AA seq
1157 aa
AA seq
DB search
MGSKSKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQ
VLPPTKDGRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVIVRESINLGHLPIMLKSK
LCHLRGADPQKLVFHKEEATEMGGYFICDGMERLARLLIIQKRNYPISMVRKSFKNRGPG
YSDKAVVIRCARDDQTSVTLKLYYLENGSARLGFWIRGREFLLPVGIILKALIDTSDHEI
FVSLACYYNERYQREKGAVGTQLIGERAQILLDEVRDLSLFTRHQCLKHIGEYFRPVMDG
FETESYTNVAEAVLEDYIFIHLGSNHDKFNLLIFMLQKLYALVDQTAAPDNPDTLQNQEV
LLPGHLIAIYLKEKLQVWLTKARQQLFDELAKQERTFDIKSVTQVKKIVGKNSTNFGRVI
ESMIKVGRLNTQSGLDLPQRDGMTIQAERLNFLRYLSHFRSVHRGAAFAKMRTTSVRKLL
PESWGFLCPVNTPDGEPCGLLNHMTCSCRISSSYDSEGKTKDTLKIRMSILSVLVAIGMT
PLLPKLESAGPPEILHVLLDGCVVGSIASLQIEEAVAHIRSLKLSSLSGVPEDLEVGYIP
LSFGGAYPGLYLFTNPSRFIRPVRNLAHVNDGGNDIELIGPFEQVFMEIRCPDGGDGGRR
DFFPATHEEIHPTGILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFSGQALQHRADLKT
YHLQTPQSPIVRTASYTKYCMDEFPTGTNAIVAVLSYTGYDMEDAMILNKMSVERGFGRG
HIYQTESIDLKKKHESDRVQEIFARSNTDRNMMSSIDSDGLPYVGQIVHPHEPIYSTYNT
LTSTTKPTYSKGSEDAIIDYVSVDGTGSKNYLQKVNIRTRRTRDPIIGDKFSSRHGQKGV
CSQLWPSEDMPFSEVTGMQPDLIINSHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFT
RSNCSKEDEEEVPVVDELGQMLIAYGFNYYGEEALYSGVYGTRLPFKIFIGPVYYQRLRH
MVSDKFQVRSTGTVDQITRQPIGGRKRGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDY
HIAHVCSDCGSLLAATTKQPQKKSLPPAGTPKSYICQACKTGKEMETVAMPYVSIYLGSV
CGAVNVKMTVQLRSQAS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgggatcaaagtcgaagcccgactacgaggcgctgcgagacctcttccgccctcacgtt
gagtcctttgattactttctcgatgagggtcttcaaaaaatattttttgcaatacggccc
gtagaaatcgtcgaccgcgtaactggagtcaagctcagaatttccttagagggtccgcag
gtacttcctccaacgaaagacgggcgtctaaacgaacctttgtatcctcatgagtgtaga
caagccagaacaacttataaaggggatttcaaggcgttattgtgttttcagtatgatgat
ggagtcattgttagagaatctatcaacttgggccatctgccaataatgctgaagtcaaaa
ctctgccacttgagaggtgctgaccctcaaaagcttgttttccacaaagaggaggcaaca
gaaatgggtgggtacttcatttgcgatggaatggagcgacttgcacgacttttaattatt
caaaagcgtaactatccaataagcatggtgcgcaaatcatttaaaaaccgtggacctggc
tacagtgacaaagcagtggttataagatgtgctcgagacgaccaaacttctgtcactctc
aagttatactaccttgaaaatggaagtgcaaggcttggattctggataagaggaagagag
tttctgcttccagttggtattattttgaaggctcttattgacacaagtgatcacgaaatc
tttgtgagcttggcatgttattataatgagagataccaaagagaaaaaggtgctgttggt
actcaacttattggtgaaagggctcaaattcttcttgatgaagtcagagatttgtcgctt
tttactcgccatcaatgcttgaagcatattggagagtacttcagacctgtcatggatgga
tttgaaactgagagttatacaaatgttgcagaagctgttcttgaagactatatctttatt
catcttgggagcaatcatgacaagttcaatttgctaatttttatgctgcagaaactttat
gcacttgtagatcaaactgctgcccctgataatcctgatacacttcaaaatcaggaagtt
ctgttgcctggacacttgatagccatttatcttaaggaaaaacttcaagtgtggctgacg
aaggcaagacaacagctttttgatgagctagcaaagcaggaaaggacctttgacataaaa
agtgtaacacaggtgaagaagattgtaggcaagaattctacaaattttgggagagtcatt
gagagcatgataaaagttggaagattgaacacacaatcaggtctagacttgcctcagaga
gatgggatgaccattcaagcagagaggctcaatttcttacgttatctatcgcattttcgt
tctgtacatagaggtgctgcttttgcaaagatgcggacgacaagtgtacgaaaattgctg
ccagaatcttggggcttcctttgccctgtcaatacgcctgatggggagccttgtggcttg
ctgaaccatatgacttgttcctgccgtatttcatcttcctatgattcggaaggaaaaact
aaagacactctcaagataagaatgtcaatactctctgtcttagttgcgattggaatgacc
ccattgcttccgaagcttgagagtgctggccctcctgaaattcttcatgttctcttggat
ggatgtgttgtaggctctatagcttctcttcaaatagaggaagcagttgcacatatccgg
agcctgaagctttcttccttatcaggggttcctgaagatttagaggtcggatatatacct
ttaagttttggtggggcatatcctggattgtacctatttactaatccttccagatttatt
cgacctgtcagaaatcttgcccatgtcaatgatggaggcaatgatatcgaacttattggg
ccgtttgagcaggtatttatggaaataagatgccctgatggtggagatggtggaagaaga
gatttctttcctgcgacacatgaagaaatacacccaactggaatacttagtgtagttgcc
aatctcactccctggtctgatcacaatcagagcccacgaaacatgtatcagtgccagatg
gccaaacaaacaatggggttttctggccaagccttgcaacatcgtgcagatttgaagaca
tatcatctccagactcctcaatctccaatcgtccggactgcttcatatactaaatactgc
atggatgagttcccaacaggcacaaatgcaattgtcgcagttttatcttacacaggttat
gacatggaagatgccatgattttgaacaagatgtctgtggagcgtgggtttggtcgtggg
catatttaccagacagagtcaattgacttaaaaaagaagcatgagtctgaccgggtccaa
gaaatatttgctaggagcaacactgatagaaacatgatgtcttcaattgactcagatggt
ctaccttatgttggacagatagtgcatccacatgagccaatatatagcacatacaatacc
ttaacaagcacaacgaaaccaacttattcaaaaggttcagaagatgccatcattgactat
gtctctgttgatggtactggctcaaagaactacctgcaaaaggttaatattcgcactcga
cgcaccagagatcctattattggtgataagtttagcagccggcatgggcagaagggtgtt
tgctctcagctatggccttctgaagacatgccattttctgaagttactgggatgcaacca
gatttaataattaattctcatgcgtttccttcgagaatgactattgcaatgcttttggag
tcgattgcagctaagggaggaagcctgcatggaaaatttgttgatgcaactcctttcacc
aggtcaaattgcagcaaagaagatgaagaagaggtcccagtggttgatgaactaggtcaa
atgctgattgcttatggtttcaactattatggagaagaggcactgtacagtggagtttat
ggaacaaggttgccttttaagatttttattggacctgtttattaccagcggctccgccac
atggtttctgacaaatttcaggtgcgctctacgggaactgttgatcagatcaccaggcaa
cccattggaggaaggaaacgaggtggtggtattaggtttggagaaatggaacgtgatgca
gttcttgcccatggagctgcctaccttttacatgacagactccacaccagctctgactac
cacatagctcatgtatgctccgactgtggcagtcttctcgcggccactactaaacaaccc
cagaagaaaagtctcccacctgccggaactcccaagagctatatatgccaagcttgcaaa
acaggcaaagaaatggaaactgtggcgatgccttacgtgtccatatatttgggttcggta
tgtggagcagtgaacgtaaaaatgacggttcagttaagaagccaagcaagctaa
DBGET
integrated database retrieval system
