Zingiber officinale (ginger): 122040482
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Entry
122040482 CDS
T08725
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1-like isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122040482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122040482
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122040482
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
122040482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
122040482
NCBI-ProteinID:
XP_042455740
LinkDB
All DBs
Position
2A:1751919..1789645
Genome browser
AA seq
1421 aa
AA seq
DB search
MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN
GLLDTRMGAANKAGVCSTCHGNFTQCPGHFGYLKLTLPVFNVGYFNSILNILKCICKVCG
RILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWCGSKNGVYEAYSTKTC
LMSLTSSYYSFDAPCPFDIDLPIALRKGVIKKARSSLAIAHDFSRTIDGSKDEVAAAMSH
ISGKVLQIGHTLSPVNVFSLFKKMLDEDCELLNLSDRPEKFIVTNIAIPPVSIRPSVFVN
AGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCLECWDHLQIQVVEYVNSEAPSIP
DSKHRGLVQRLKGKQGRFRGNLSGKRTEFTGRTVISPDPNLKITEVAIPMLMAKKLTYPE
RVFAHNIEKLRQRICNGPDKYPGANFLLLPDGARQHLRYVDKKTAASELKHGFIVERHLE
DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEA
RTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRATFSLLCSYLGDAM
DSVDLPTPAIMKPVELWTGKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKYETMCP
SDGYVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYNSHAAASCMNRLAKLSARWIGN
HGFSIGIDDVQPGEHLTSQKKKKIDDGYRECYDLISSYSKGKLSLQPGCNAAQTLELKIT
NVLNEIRATAGNVCMDELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGHRAPNGF
INRTLPHFTINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSR
RLMKGMEDLSIYYDQTVRNASGGVVQFVYGDDGMDPAKMEGRDGIPLNLDQLFMKIMATC
PPGEKNMLSPLEISKIVDDRLAKHDMSPEGGCSTAFNKLLSNFVHKRAAAFANTRKSLQL
DEAVVEGKRSTALENIVANISGISSRQLEVFLETCISRYHSKKVEAGASIGAIGAQSIGE
PGTQMTLKTFHFAGVANMNVTLGVPRIKEIINAAKNISTPIITAALENDNNVVFARMVKS
SIEKTTLGEVAKAVKIVLGSGQPYISIKLDMDLIEALHMGLTAESVRHSILNHPKIKLKE
EHVCSVRHDKSKIYTPEVDRRKLLSELHNLKSMLPKVVVKGIPSVERAIINEKKVDNEKK
VEYSLLVEGTNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGM
SIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRI
EGVSECIIMGIPMQLGTGILKLRQRVEKLPELKYASDPIIP
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggcgggaagagaagctacggtgcacgaaagaacctttcatcgaggacgtaggc
cctcggcggataaagagtattaagtttagcgcgttctccggcgaggaaataaggaagttg
gcggaagtgcaggtttggaataacagaatctatggtgccgatttgaggcccgttcagaat
ggcctgcttgatactcgcatgggtgcggcaaacaaggctggagtttgttctacatgccat
ggcaattttacacagtgtcctgggcatttcggatacctaaagttgacacttcctgttttc
aacgtcggctatttcaattctatactgaacatcttgaagtgcatatgcaaggtctgtggt
aggatacttctcgttgaggatgatcggaaggcttttttgaaaaagatgagaaatcctaaa
gctgatatatctatgaagaattctcttatgaagaaaattagagacaagtgcaaactttct
atttgtccatggtgtggaagtaaaaatggtgtatacgaggcatactcaaccaaaacctgt
ctcatgtccctcacctcctcttactatagctttgatgctccttgcccctttgatattgat
ctgcccattgctcttcgtaaaggagttattaaaaaagctagatcttcgttagccattgct
catgatttttctagaaccattgatggaagcaaagatgaagttgctgctgcaatgtctcac
atcagtggcaaagttttgcaaattgggcacactctaagtcctgttaatgtattctctctt
ttcaaaaaaatgcttgatgaggactgtgaattgcttaatctttctgatagacctgagaaa
tttattgtgacaaacattgctataccacctgtgagcatccgtccttctgtttttgttaat
gctggagtttcaagcaacgaggatggtattactagcattctgaaaaatattattaacacc
aattctattcttcgagaggaccttgaaggtggttcacccccaccaaaatgtttggaatgc
tgggatcaccttcaaattcaagttgttgaatatgttaacagtgaagccccttcaattccc
gattcaaaacatcgtggccttgttcagaggcttaaagggaagcaagggcgttttcgtggt
aacttgtctggaaaacgtactgaatttactggaagaactgtcatttctccagatccaaat
ttgaaaattaccgaggttgcaatccctatgcttatggcaaagaaattaacttacccagaa
cgggtatttgctcataatatagaaaagttgagacaacggatatgcaatggacctgacaaa
tacccaggggcaaacttccttttactaccagatggagccagacagcatttaagatatgtg
gacaagaaaactgccgctagtgaactaaaacatggttttatagtagaaaggcatttggaa
gatggagatgtcgttctttttaacagacagccaagtctgcatagaatgtcaattatgtgc
cacagggcaagaataatgccttggagaacattgagatttaatgaatctgtttgcaaccct
tacaatgctgactttgatggtgatgagatgaatttacatgtccctcaaacagaagaagca
cgcactgaagctcttacgcttatgggggttcaaaataacttgtgcactccaaagaatggg
gagatattagttgcttcaacacaggatttcctgacttcatcatttctgattacgcggaaa
gataccttctatgatcgagctacattctctcttttgtgttcctacctgggtgatgctatg
gattctgttgatttgcctacgccagccattatgaagcctgttgaactatggactgggaag
caacttttcagtgttcttgtgcgtcctaatgcacacacaaaggtgtttgttaatcttata
gtcaaagagaaaatatatacaagagagacaatgtatagaaaatatgagaccatgtgtcct
agtgatggatatgtatattttcgtaacagtgagcttataagtgggcagcttgggaaggct
actctaggaaatggtaacaaggatggcctattctctgttctcttaagagactataattct
catgctgctgcaagttgtatgaatcgtttggctaagctaagtgctaggtggatagggaac
catggattttcaattggcattgatgatgtccagccaggagaacatctcacttcgcaaaag
aagaaaaaaattgatgatggatacagagaatgctatgaccttatttcttcatatagcaaa
ggaaaactttcattgcagcctggttgcaatgcagctcagaccttggaacttaagataaca
aatgtattaaatgaaatacgagctactgctggaaatgtttgcatggatgaacttcactgg
agaaacagtcccttaattatgtcacagtgtggctctaaaggttctccaatcaatatcagc
cagatggtagcatgtgttggtcaacaatcagttgggggtcatcgtgctcctaatggattt
ataaatcgaactcttccacatttcactattaattcaaagactccagctgctaaaggcttt
gttgctaattcattttacactggcttgacggctacggagttcttcttccatacaatgggt
ggacgagaaggtcttgtggacacagcagtaaaaacagcagaaaccggatacatgtctcgg
agattgatgaaaggcatggaagatctctccatttattatgatcagacagtgcgcaatgct
agtggtggtgtagtacagtttgtttatggagatgatggcatggatcctgcaaagatggaa
ggcagggatggtattcccttaaatttggatcaattgtttatgaagattatggcaacttgc
cctcctggagaaaagaacatgttatctcccttagaaatttcaaaaattgtggacgacaga
ttggcaaagcatgatatgtcacctgagggtggttgctctactgccttcaacaaattgttg
tctaattttgtccataaacgtgctgctgcttttgcaaacacaaggaaatcacttcaactt
gatgaagctgttgtagaggggaagcgttccactgcattggaaaatattgttgctaatata
tcaggaatttcttctagacaactggaggtttttctagagacatgtatatcacgatatcat
tcgaaaaaagtggaagctggagcatcaattggtgcaattggagcccaaagcatcggagag
ccagggactcaaatgacattaaaaacttttcactttgctggagttgctaacatgaatgtc
actcttggagttccgcgtatcaaggaaataataaatgctgcaaaaaacataagcacaccg
attattactgctgcacttgaaaatgataacaatgtcgtttttgcacgcatggtgaaaagc
tcaatcgagaaaacaaccctaggggaagttgccaaagcagtaaagatagtgttgggctca
ggtcaaccatatatatctataaaacttgacatggacctaattgaagcattacatatggga
ctcactgctgaatctgttcgtcactcaatcctgaatcatccaaaaataaaactaaaagaa
gagcacgtatgcagtgtaagacatgacaagtcgaaaatatacaccccagaagttgataga
agaaagctcctgtctgaactacacaacttaaaatccatgcttccaaaggttgttgtgaag
ggcatcccatctgtcgagcgagcaattatcaatgaaaagaaagttgacaatgaaaagaag
gtagaatacagcctattggttgaagggacaaaccttttaggtgtcatgggaactcaggga
atcgatggaagaaaaacaacaagcaaccatgtcattgaagttcagcagacgctcggaatt
gaagctgcaaggaagtgcatcgttaatgaaattcagtataccatgcgaagccatggcatg
agtatcgatcttcgccacatgatgctcctggcggatctaatgacttataagggtgaagtt
ctcgggattacaagatttggcatttcaaaaatgaaagaaagtgttctgatgcttgcttcc
tttgagaaaactgccgagcacctgttcaatgcttcctacgccggtagggatgatcgtatc
gagggagtgagcgagtgtatcataatgggcatccccatgcaactcggtaccggaatactt
aaactcagacaaagggtcgaaaaactgcccgaactcaagtacgcatccgatccaattata
ccctga
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integrated database retrieval system
