KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:bant00010 bant01200 bant01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:bant00010 bant01200 bant01230 bant01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bant00010 bant00020 bant01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bant00010 bant00020 bant00620 bant00785 bant01200 bant01210 bant01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:bant00020 bant01200 bant01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bant00020 bant01200 bant01210 bant01230 bant01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bant00020 bant01200 bant01210 bant01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bant00030 bant01200 bant01100 bant01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bant00030 bant01200 bant01100 bant01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bant00030 bant01200 bant01230 bant01100 bant01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:bant00030 bant00230 bant01200 bant01230 bant01100]

Other carbohydrate metabolism
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:bant00500 bant01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:bant00520 bant01250 bant01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:bant00520 bant01250 bant01100]
M00012 Glyoxylate cycle [PATH:bant00630 bant01200 bant01100 bant01110]

Energy metabolism
Carbon fixation
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:bant00430 bant00620 bant01200 bant01100 bant01120]

Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
M00151 Cytochrome bc1 complex respiratory unit [PATH:bant00190 bant01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:bant00190 bant01100]
M00416 Cytochrome aa3-600 menaquinol oxidase [PATH:bant00190 bant01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:bant00190 bant01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:bant00061 bant01212 bant01100]
M00083 Fatty acid biosynthesis, elongation [PATH:bant00061 bant01212 bant01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:bant00061 bant00071 bant01212 bant01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:bant00564 bant01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:bant00230 bant01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:bant00230 bant01232 bant01240 bant01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:bant00230 bant01232 bant01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bant00240 bant01232 bant01240 bant01100]

Amino acid metabolism
Serine and threonine metabolism
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:bant00260 bant01230 bant01100 bant01110]
M00621 Glycine cleavage system [PATH:bant00260 bant00630 bant00785 bant01200 bant01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:bant00270 bant00920 bant01200 bant01230 bant01100 bant01110]
M00609 Cysteine biosynthesis, methionine => cysteine [PATH:bant00270 bant01230 bant01100]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:bant00270 bant01230 bant01100]
M00034 Methionine salvage pathway [PATH:bant00270 bant01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:bant00290 bant00770 bant01210 bant01230 bant01100 bant01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:bant00290 bant01230 bant01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:bant00290 bant01210 bant01230 bant01100 bant01110]

Lysine metabolism
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:bant00300 bant01230 bant01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:bant00300 bant01230 bant01100 bant01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:bant00220 bant01210 bant01230 bant01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:bant00220 bant01230 bant01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:bant00330 bant01230 bant01100]
M00970 Proline degradation, proline => glutamate [PATH:bant00330 bant01100]
M00972 Proline metabolism [PATH:bant00330 bant01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:bant00330 bant01100]
M00135 GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:bant00330 bant01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:bant00340 bant01230 bant01100 bant01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:bant00340 bant01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:bant00400 bant01230 bant01100 bant01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:bant00400 bant01230 bant01100 bant01110]

Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:bant00730 bant01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:bant00740 bant01240 bant01100 bant01110]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:bant00750 bant01240 bant01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:bant00760 bant01240 bant01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:bant00770 bant01240 bant01100 bant01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:bant00770 bant01240 bant01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:bant00780 bant01240 bant01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:bant00780 bant01240 bant01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:bant00785 bant01240 bant01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:bant00790 bant00670 bant01240 bant01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:bant00790 bant01240 bant01100]
M00140 C1-unit interconversion, prokaryotes [PATH:bant00670 bant01240 bant01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:bant00860 bant01240 bant01100 bant01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:bant00860 bant01240 bant01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:bant00130 bant01240 bant01100 bant01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:bant00900 bant01100 bant01110]
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:bant00900 bant01100 bant01110]

Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
M00793 dTDP-L-rhamnose biosynthesis [PATH:bant00521 bant00523 bant00541 bant01250 bant01100 bant01110]

Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
M00859 Bacillus anthracis pathogenicity signature, anthrax toxin

Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:bant01501]

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity