Pathway Maps

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KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge of the molecular interaction, reaction and relation networks for: The pathway map viewer linked from this page is a part of KEGG Web Apps and contains features of KEGG mapping.

Pathway Identifiers

Each pathway map is identified by the combination of 2-4 letter prefix code and 5 digit number (see KEGG Identifier). The prefix has the following meaning:
map
manually drawn reference pathway
ko
reference pathway highlighting KOs
ec
reference metabolic pathway highlighting EC numbers
rn
reference metabolic pathway highlighting reactions
<org>
organism-specific pathway generated by converting KOs to geneIDs
vg
viruses pathway generated by converting KOs to geneIDs New!
vx
viruses extended pathway generated by including synteny analysis data New!
  • Annotation
  • identifiers
    and the numbers starting with the following:
    011
    global map (lines linked to KOs)
    012
    overview map (lines linked to KOs)
    013
    higher (multi-organism) level overview map (lines linked to KOs)
    010
    chemical structure map (no KO expansion)
    07
    drug structure map (no KO expansion)
    other
    regular map (boxes linked to KOs)
    are used for different types of maps.

    Pathway maps are associated with KEGG modules, reaction modules, KEGG networks and taxonomy mapping.
  • Annotation
  • M - module
    R - reaction module
    N - network
    T - taxonomy mapping

    1. Metabolism

    1.0 Global and overview maps
    1.1 Carbohydrate metabolism
    1.2 Energy metabolism
    1.3 Lipid metabolism
    1.4 Nucleotide metabolism
    1.5 Amino acid metabolism
    1.6 Metabolism of other amino acids
    1.7 Glycan biosynthesis and metabolism
    1.8 Metabolism of cofactors and vitamins
    1.9 Metabolism of terpenoids and polyketides
    1.10 Biosynthesis of other secondary metabolites
    00940 M
    Phenylpropanoid biosynthesis
    00945
    Stilbenoid, diarylheptanoid and gingerol biosynthesis
    00941 M
    Flavonoid biosynthesis
    00944
    Flavone and flavonol biosynthesis
    00942
    Anthocyanin biosynthesis
    00943 M
    Isoflavonoid biosynthesis
    00946 M T
    Degradation of flavonoids
    00901 M T
    Indole alkaloid biosynthesis
    00403 M
    Indole diterpene alkaloid biosynthesis
    00950 M
    Isoquinoline alkaloid biosynthesis
    00960
    Tropane, piperidine and pyridine alkaloid biosynthesis
    00996
    Biosynthesis of various alkaloids
    Including: Cucurbitacin biosynthesis, Solanine and tomatine biosynthesis, Ephedrine biosynthesis, Capsaicin biosynthesis, Acridone alkaloid biosynthesis
    00232 M
    Caffeine metabolism
    00965 M
    Betalain biosynthesis
    00966 M
    Glucosinolate biosynthesis
    00402
    Benzoxazinoid biosynthesis
    00311 M T
    Penicillin and cephalosporin biosynthesis
    00332 M
    Carbapenem biosynthesis
    00261 M
    Monobactam biosynthesis
    00331 M
    Clavulanic acid biosynthesis
    00521 M
    Streptomycin biosynthesis
    00524
    Neomycin, kanamycin and gentamicin biosynthesis
    00525 M T
    Acarbose and validamycin biosynthesis
    00401
    Novobiocin biosynthesis
    00404 M T
    Staurosporine biosynthesis
    00405 M
    Phenazine biosynthesis
    00333 M T
    Prodigiosin biosynthesis
    00254 M
    Aflatoxin biosynthesis
    00998 M T
    Biosynthesis of various antibiotics
    Including: Kanosamine biosynthesis, Aurachin biosynthesis, Bacilysin biosynthesis, Puromycin biosynthesis, Dapdiamides biosynthesis, Fosfomycin biosynthesis, Cremeomycin biosynthesis, Fumagillin biosynthesis, Pentalenolactone biosynthesis, Terpentecin biosynthesis, Roseoflavin biosynthesis, Cycloserine biosynthesis
    00999 M T
    Biosynthesis of various plant secondary metabolites
    Including: Crocin biosynthesis, Ginsenoside biosynthesis, Saponin adjuvant biosynthesis, Cannabidiol biosynthesis, Mugineic acid biosynthesis, Pentagalloylglucose biosynthesis, Benzoxazinoid biosynthesis, Gramine biosynthesis, Coumarin biosynthesis, Furanocoumarin biosynthesis, Hordatine biosynthesis, Podophyllotoxin biosynthesis
    00997 M T
    Biosynthesis of various other secondary metabolites
    Including: Ditryptophenaline biosynthesis, Fumiquinazoline D biosynthesis, Paerucumarin biosynthesis, Staphyloferrin B biosynthesis, Cyclooctatin biosynthesis, Lovastatin biosynthesis, Grixazone biosynthesis, Staphyloferrin A biosynthesis, Ethynylserine biosynthesis, Aerobactin biosynthesis
    1.11 Xenobiotics biodegradation and metabolism
    1.12 Chemical structure transformation maps

    2. Genetic Information Processing

    2.1 Transcription
    2.2 Translation
    2.3 Folding, sorting and degradation
    2.4 Replication and repair
    2.5 Chromosome
    2.6 Information processing in viruses

    3. Environmental Information Processing

    3.1 Membrane transport
    3.2 Signal transduction
    3.3 Signaling molecules and interaction

    4. Cellular Processes

    4.1 Transport and catabolism
    4.2 Cell growth and death
    4.3 Cellular community - eukaryotes
    4.4 Cellular community - prokaryotes
    4.5 Cell motility

    5. Organismal Systems

    5.1 Immune system
    5.2 Endocrine system
    5.3 Circulatory system
    5.4 Digestive system
    5.5 Excretory system
    5.6 Nervous system
    5.7 Sensory system
    5.8 Development and regeneration
    5.9 Aging
    5.10 Environmental adaptation

    6. Human Diseases

    6.1 Cancer: overview
    6.2 Cancer: specific types
    6.3 Infectious disease: viral
    6.4 Infectious disease: bacterial
    6.5 Infectious disease: parasitic
    6.6 Immune disease
    6.7 Neurodegenerative disease
    6.8 Substance dependence
    6.9 Cardiovascular disease
    6.10 Endocrine and metabolic disease
    6.11 Drug resistance: antimicrobial
    6.12 Drug resistance: antineoplastic

    7. Drug Development

    7.1 Chronology: Antiinfectives
    7.2 Chronology: Antineoplastics
    7.3 Chronology: Nervous system agents
    7.4 Chronology: Other drugs
    7.5 Target-based classification: G protein-coupled receptors
    7.6 Target-based classification: Nuclear receptors
    7.7 Target-based classification: Ion channels
    7.8 Target-based classification: Transporters
    7.9 Target-based classification: Enzymes
    7.10 Structure-based classification
    7.11 Skeleton-based classification

    Last updated: April 9, 2025