KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: cib00010 cib01200 cib01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: cib00010 cib01200 cib01230 cib01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: cib00010 cib00020 cib01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: cib00010 cib00020 cib00620 cib00785 cib01200 cib01210 cib01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: cib00020 cib01200 cib01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: cib00020 cib01200 cib01210 cib01230 cib01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: cib00020 cib01200 cib01210 cib01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: cib00030 cib01200 cib01100 cib01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: cib00030 cib01200 cib01100 cib01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: cib00030 cib01200 cib01230 cib01100 cib01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: cib00030 cib00230 cib01200 cib01230 cib01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: cib00030 cib01200 cib01100 cib01120]
Other carbohydrate metabolism
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:cib00040 cib00030 cib01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:cib00040 cib00030 cib01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:cib00052 cib01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:cib00053 cib01100 cib01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:cib00500 cib01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:cib00500 cib01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:cib00520 cib01250 cib01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:cib00520 cib00052 cib01250 cib01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:cib00520 cib01250 cib01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:cib00520 cib01100]
M00012 Glyoxylate cycle [PATH:cib00630 cib01200 cib01100 cib01110]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: cib00730 cib01240 cib01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: cib00730 cib01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: cib00740 cib01240 cib01100 cib01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: cib00750 cib01240 cib01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: cib00760 cib01240 cib01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: cib00770 cib01240 cib01100 cib01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: cib00770 cib01240 cib01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: cib00780 cib01240 cib01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: cib00780 cib01240 cib01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: cib00785 cib01240 cib01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: cib00790 cib00670 cib01240 cib01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: cib00790 cib01240 cib01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: cib00860 cib01240 cib01100 cib01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: cib00860 cib01240 cib01100 cib01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: cib00860 cib01240 cib01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: cib00130 cib01240 cib01100 cib01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: cib00130 cib01240 cib01100 cib01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
M00857 Salmonella enterica pathogenicity signature, Vi antigen
Drug resistance
M00696 Multidrug resistance, efflux pump AcrEF-TolC
M00697 Multidrug resistance, efflux pump MdtEF-TolC
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation
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