Austrofundulus limnaeus (annual killifish): 106527451
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Entry
106527451 CDS
T06063
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106527451 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106527451 (bard1)
04121 Ubiquitin system [BR:
alim04121
]
106527451 (bard1)
03036 Chromosome and associated proteins [BR:
alim03036
]
106527451 (bard1)
03400 DNA repair and recombination proteins [BR:
alim03400
]
106527451 (bard1)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
106527451 (bard1)
Ubiquitin system [BR:
alim04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
106527451 (bard1)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
106527451 (bard1)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
106527451 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_4
Ank_3
Ank_5
BRCT_2
BRCT
zf-RING_5
zf-RING_10
zf-C3HC4_3
PTCB-BRCT
zf-C3HC4_4
DUF3782
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
106527451
NCBI-ProteinID:
XP_013877793
UniProt:
A0A2I4CCS3
LinkDB
All DBs
Position
Unknown
AA seq
788 aa
AA seq
DB search
MDENAALQTEEWKNTKEAVANFRKLLLCSKCSDLMKEPVCLGMCEHMLCRSCAGPRAGDG
CVVCHSPAWVKDIQINRQLSSIVQIFCGLESLLNPAQQPDSSAATEVQTQPEAAVLKHKK
NFKIWFSPRSRKVRCRVEKPSEVDVSDGKSAEVAAAQLSTTTALCQNMSVFNFTSSSQDS
SSSSHKCSSVNKKGKKRSKKTATSKHVQKATRATLRETKQNRKKQKLEAINQQWGITEEE
TVPSKLEQPCADGERRSSKKVSFLSPVTSDVSQLEASHGNTNELHPASSAIKDSLSESRI
NASNYQTQPGQSTSNEKPSANDSHPDDSPEKQENSSPPENPSKRNRTEAKTCTLENTPKR
PRASPGQRRKSLGRTSLSVINHLSSPRSDKSSKNSRKERGSPSKSSGSPGSSVGRPSSGS
PAVMKRNHKGETLLHLAAIKGDTEAVKELLDQGADPNLKDNAGWTPLHEACNLGHLPVVE
LLVSRGALLNTPGYENDSPLHDAVRNGHAAIVKRLLQLGALQNVLNLHGKRPADYGVSQE
MLEIFQEAXEGTQYANSPTSHSPSANLSAVSECVKRDQMVVILASKLSPAELHQLARLEE
LGGKMAETFSSSVSHVVVPKGQMPTTYSTLLGILAGCWVVKYSWVKACLQARKWLPEAEH
EAGEGPQRSRINRCSLLPPLFDGCFFFLLGSFKAPTKDELTRLLREGGGQLLSRQPKPDS
DVTQTLNAAAYHAQPGSDQALCTQYIIYDHQRAFRPAVVRRGKVWSAPSSWVIDCIAAFS
LLPVPDPK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaacgcygcactgcagactgaggagtggaaaaacacaaaagaggcggtcgca
aayttccgcaaactgcttctttgttccaaatgctctgatttgatgaaggagcccgtctgt
ctgggcatgtgcgagcatatgctgtgcaggtcttgtgctggcccccgggcaggggacggc
tgtgtggtgtgtcacagccctgcgtgggtgaaggacattcaaatcaacaggcagctcagc
agcatcgtgcagattttctgtggtttggagtccctgctaaatcctgcacaacaacctgac
tcatctgctgctactgaggttcaaacacaacctgaagctgcagtcttaaaacacaagaag
aactttaagatctggttcagtccacgcagtcgtaaggtgcgctgcagggtagagaaacct
tcagaggtcgatgtatcagacggtaaatctgctgaagtggctgcagcacaactaagcacc
actactgctctgtgccaaaacatgtcggtttttaattttacttcatcctcccaggactct
tcttcttcttctcacaaatgcagcagtgtaaataaaaaaggaaagaagaggtcgaagaaa
accgccaccagcaagcatgtgcaaaaagcaactagagccacacttagagagacaaagcag
aatagaaagaagcaaaagttggaggccataaaccaacaatggggaataacagaggaagag
actgttccatccaaactggagcagccctgtgctgatggagagagaaggtccagtaaaaag
gtttctttcctaagtcctgtcacctctgatgtgtctcagcttgaagcatcacatggtaac
acaaatgaactccatcctgccagcagtgcaataaaagacagtctctcagaaagcagaatc
aatgcctcaaattaccaaactcagcctggtcagagcacatcgaacgagaaaccatctgca
aatgactcccatcctgatgacagtccagagaaacaggaaaactcatctcctcctgagaat
ccatcgaaaaggaacagaacagaggcaaaaacctgcaccttggagaatacaccaaaaagg
ccgagggcgtctccgggccaaaggagaaaatcactgggtcggacatctttgtcagtcatc
aaccatttatcttcacccaggagtgataagagcagcaaaaactctagaaaggaaaggggc
agtcccagcaaatcttcgggtagtcccggatcatctgtcgggcggccaagttccggaagt
cctgcagtaatgaagagaaaccacaagggagagaccctgctgcatctcgctgcgataaag
ggagatacggaggctgtcaaggaactgctggaccaaggagctgaccccaacctgaaagac
aatgctggatggacacctctgcatgaagcgtgtaaccttggccacctgccagttgtggag
ttgttggtctccaggggggccttgttaaacacacctggctatgaaaacgactctccactc
cacgatgccgtaaggaacggacatgcagccattgtgaaacggctactgcagctcggggct
ttgcagaatgtccttaatctgcatgggaagcgtcctgcagattacggggtgagccaggag
atgttggagattttccaggaagccgstgaaggaacccaatatgctaattctcctacatct
cacagcccctcagccaatctctctgcggtgagtgagtgtgtgaaaagggatcagatggtg
gtgattttggccagcaagctgtcaccagcagaactgcatcagttggccagactagaagaa
ctgggaggaaaaatggctgaaaccttttctagctctgtgagccatgttgttgtaccaaaa
ggacaaatgcccaccacctactccaccctcctgggtattcttgcaggctgctgggttgtc
aaatacagctgggtgaaagcatgtctgcaggcgaggaagtggctgccagaagctgagcat
gaagcaggagaaggccctcagcgcagtcgcatcaacagatgcagtttgctcccaccactc
ttcgacggctgtttcttctttctcctcggctccttcaaggctccaaccaaagatgagctc
accaggctgctgcgggaaggaggcggccagctcctgagccgacagccgaagccggacagc
gacgtgacgcagactctgaacgctgcagcctaccatgctcagccaggctccgatcaggcc
ctgtgcacccagtacatcatctatgaccaccagagagccttccggcctgcagtggtcaga
cggggaaaggtgtggtctgctccctcctcctgggtcatcgactgcatcgcagcctttagc
ctcctgcctgtaccagacccaaagtaa
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