Arabidopsis lyrata (lyrate rockcress): 9328256
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Entry
9328256 CDS
T01578
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
9328256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9328256
04121 Ubiquitin system [BR:
aly04121
]
9328256
03036 Chromosome and associated proteins [BR:
aly03036
]
9328256
03400 DNA repair and recombination proteins [BR:
aly03400
]
9328256
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
9328256
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
9328256
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
9328256
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
9328256
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_6
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-RING_2
Prok-RING_4
zf-HC5HC2H_2
zf-RING_10
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
9328256
NCBI-ProteinID:
XP_020868861
LinkDB
All DBs
Position
Unknown
AA seq
708 aa
AA seq
DB search
MAEFTNMLMNPWVLHLQKLELELNCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVETGCP
VCKSKHSKKSRRNLQFMESVISIYKSLNAAVSVHLPQLQIPNDCNYKDDAPKHGGSEDSE
MTDKDVSKRSGGTDSSCRDGSPLPTSEESDPRPKHQDWTAEQLRDHLLLYEFESENDAGN
HTPESYTGQTANNVRDISASEQPANAARKRICGDSFIQESNPNPKTQDQTLLRLMESLRS
DDPTDYVKSQKHQPLPKSHTEQDTKRKRDITASEAMENHLKVPKREKNLMQKAADIDFND
KCSANSDDQLIEKISKASDKPPSNITICGFCQSAMVSEATGEMLHYSRGRPVVGDDIFHS
NVIHVHSACIEWAPQVYYEGDTVKNLKAELARGMKIKCTKCSLKGAALGCYVKSCRRSYH
VPCAREISRCRWDYEDFLLLCPAHSSVKFPNDKSGHRVSRAEPLPKTNPAELCSLEKTPA
ITKELVLCGSALSKSDKNLMESLAVKFNATISRYWNPSVTHVIASTDEKGACTRTLKVLM
GILNGKWIVKADWMKASLEASQPVDEEPFEIQIDTQGCQDGPKTARLRAETNKPKLFDGL
KFYFFGEFDKGYKEDLQNLVKVAGGTALNTEDELGAESSNTVNDQRSSSIVVYNIDPPLG
CALGEEVTIIWQRANDAEALASQTGSRLVGHTWLLASIAGYKLHPVIS
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatttacaaacatgctgatgaatccatgggttcttcatctccagaagctcgag
ctcgagctcaattgccctctatgcttgaaattgcttaatcgaccggtgttgcttccatgc
gaccacgtcttttgcgattcatgtgtacacaaatcgtcgcaagtcgaaacaggctgtcct
gtctgcaaatccaaacattccaaaaagtctcggaggaatcttcaatttatggagagtgtt
ataagcatatacaaaagcttgaatgcagctgttagtgttcatctcccacaattacagatt
ccgaatgattgcaactacaaggacgatgcccctaaacacggcggatctgaagattctgag
atgactgataaggatgtgagcaagcgcagtggtggtactgattcctcttgtcgtgatggt
tctcctcttccgacctcagaagaaagcgatccaagacctaaacatcaggattggactgct
gagcagttgcgtgatcatctcttattatatgagtttgaatcagagaatgatgctggcaat
cacacaccggaaagttatacaggacaaactgcaaacaatgtgagggacatcagtgcttct
gagcagcctgccaatgctgcaaggaagcggatttgtggtgattcctttatccaggaaagc
aatccaaatcctaagactcaggatcaaactttgctgcggttgatggagagcctccggtca
gatgatcccactgattatgttaaatcacagaaacatcagccgttacccaagagtcataca
gaacaagatactaaaaggaagcgtgacatcaccgcttccgaagcaatggaaaatcatctg
aaagttcccaagagggagaagaacctgatgcaaaaagctgctgatattgacttcaatgat
aaatgctctgcaaactctgatgatcaactaattgagaaaatctcaaaggcatcagataaa
ccaccatccaacataactatttgtggattctgccaatccgctatggtatctgaggctact
ggagaaatgctgcattactctaggggaagaccagtggttggagatgacatcttccactcc
aatgttatccatgtccatagcgcatgtatcgaatgggcaccgcaagtttactatgaaggt
gacacagtgaagaacctgaaagcagaactggcaagggggatgaaaatcaagtgcactaaa
tgtagtctaaaaggagctgccttgggctgctatgtcaagtcttgccgccgaagctatcat
gttccatgtgcaagggagatttccagatgccgttgggattatgaagactttcttctactt
tgtccagctcattcttctgtcaaattcccaaacgataagtctggacatcgcgtatccaga
gctgagcccttaccaaaaacaaatcctgctgagctatgttctttggagaaaacaccagct
attacaaaagagctcgttctctgtggatcagcactctctaaaagtgataagaacctgatg
gaaagtttagctgttaaattcaatgcaaccatatcaaggtactggaacccaagtgttaca
catgtgattgcttctacagacgaaaaaggagcatgcacaagaactttgaaggttcttatg
ggtattctcaatggaaaatggattgtcaaagcagattggatgaaagcaagccttgaagct
tctcaacctgttgatgaggaaccatttgagattcaaattgatactcaaggatgtcaagat
ggaccaaaaaccgcaagactcagagcagaaactaataaaccaaagctctttgatggcttg
aagttctatttctttggagaattcgataaaggatacaaagaagaccttcagaatctagta
aaagtagctggtgggacggccttgaacacagaggatgagcttggtgcagaaagcagcaac
actgtcaatgaccaaagatcatcatcgattgtggtttacaacattgatcctccacttgga
tgtgccttaggtgaagaagtcacgattatttggcaacgagctaatgacgcagaagcttta
gctagccaaactgggtctcgtctcgttggtcacacatggctcttggcgtccattgctggt
tacaagttacatcctgtgattagctaa
DBGET
integrated database retrieval system
