Astyanax mexicanus (Mexican tetra): 103032898
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Entry
103032898 CDS
T05042
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103032898 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103032898 (bard1)
04121 Ubiquitin system [BR:
amex04121
]
103032898 (bard1)
03036 Chromosome and associated proteins [BR:
amex03036
]
103032898 (bard1)
03400 DNA repair and recombination proteins [BR:
amex03400
]
103032898 (bard1)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103032898 (bard1)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
103032898 (bard1)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
103032898 (bard1)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
103032898 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
zf-RING_6
Ank_4
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
DUF6615
zf-RING_10
zf-RING_UBOX
PTCB-BRCT
zf-C3HC4
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
103032898
NCBI-ProteinID:
XP_022535793
Ensembl:
ENSAMXG00000018892
LinkDB
All DBs
Position
11:43857954..43910191
Genome browser
AA seq
800 aa
AA seq
DB search
MGSEPPVESARGWVKTREAAARFRELLLCSKCLNILTEPVCLGSCEHLLCRSCAGPHVGD
GCSVCHSPAWVKDIQINRQLSNITELFLNLESLLCPPEVQDPQNAESSTSPNESSVLKHK
KNFKIWFSPRSRKVRCRVEKQVEVTLQTGKSPTGSSEPASKTKDPKLLSVFNFNSSSQDS
GSSSPQREGGSDGRKRKRKKRSMGAASKAASDRPRPPTRNQTKQNLKKMRLEAVNQQWGF
SKDGAVDGAEHGEVQGEEEMKKNVSINEGRISKRVYFQCPDGQPEPEPQVVQECQETPSQ
GVPSPRRSILKEGTAKEVQNVLQSPCNNQTESVDEIKTPTRLRSPGRTPKRTRLEENRSS
PQSTPKRPKLSPGRRRRSAPARATILPTPPPSPDCSSSILRNAPEKARKEQHGSPASSPA
TGKRDPLERQSQSSPAYMKRNHKGETPLHLAAIKGDVEATKELLAQGADPNMKDHAGWTP
LHEACNLGHLGVVEVLLQQGALLNTPGYENDSPLHDAVRNGHAAVAKVLLEHGASPNVLN
IVGLRPVDYAATPEMKEILKVSPEAPHPVTVPLTSPASLSKPAGVIRRDVPVTVMGSKLT
QPQQNQLVKAARILGGKRAEAFSSAVTHVVVPDGPVPTTLTALQGILSGCWVLSFSWLAN
SLQQRRWLDESEFEQGEGPQRARVNRDNLLPRLFDGCFFYLLGSFQKPPKDELLQLVKAG
GGQLLSRQPKPDSDVTQTLSSAAYHAQPGSDQAFCTQYILYDPEGSYRPDRIRLGKVWSA
PSTWLVECIKTFSLLPVPEL
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagaaccgcctgtggagtcagcgcgcggctgggtgaagacccgagaggcggcg
gcgcggttccgagagctgctgctctgctccaaatgtttaaacatcctgacggagccggtg
tgtctgggcagctgtgaacatttgctttgcaggtcgtgtgccggtccgcatgttggagat
ggctgcagtgtgtgccacagtcctgcttgggtgaaagatatccagatcaatagacaactc
agcaacatcactgagctcttcctcaacctggagtcattgctttgtcctccagaggtccaa
gaccctcagaatgcagaatcctccacatctccaaacgagtcctctgtcctcaagcacaag
aagaatttcaagatctggttcagtccaaggagccgcaaagtgcgctgccgagtggagaaa
caggtggaggtgaccctgcagacgggaaaaagtcctactgggtcatctgagcccgcatcc
aaaaccaaagacccgaaactcctgtctgtcttcaacttcaactcctcctctcaggattct
ggatcttcttctcctcaaagggaaggaggaagtgatggaaggaagaggaaaaggaagaaa
cgcagcatgggggctgccagcaaagcggccagtgacagacctaggccgcccaccaggaat
cagaccaagcagaacctgaagaagatgaggctggaggctgtgaaccagcagtggggcttc
agtaaagatggtgcagtggatggtgcagagcatggtgaggttcaaggagaagaggagatg
aagaagaatgtgagcattaatgaggggagaataagtaaaagggtgtacttccaatgccct
gatggacaacctgaacctgaacctcaggtagttcaagaatgtcaagaaaccccttcccag
ggggtccccagcccaaggaggagcatcctgaaggagggaacagcaaaggaagttcagaac
gtgctccagtctccctgtaacaaccagactgaatcagttgatgaaattaaaacccctact
cgtcttcgttcccctggtagaacccccaaaagaaccaggctggaggagaacagaagcagc
ccacagtccacaccaaagaggcccaagctctctccaggccgtagacggagatcagctcca
gctagagccaccatactgcccactcctccaccttctccagactgctccagctccatcctc
cgtaacgctcctgaaaaagccagaaaagagcagcatgggagcccagccagctctcctgct
actgggaagagagatccactggagagacagagccagagcagtccagcctacatgaagagg
aaccataaaggagagacaccactgcatctggcggccattaagggagatgtggaggcgaca
aaagagctcctggctcagggagctgaccccaacatgaaggaccacgctggctggactcca
ctgcatgaagcatgcaacctgggccacctgggtgtggtggaggtgctcctgcagcagggg
gcgctgctgaacactcctggctatgagaatgactcccctcttcacgacgcggtgaggaac
ggacatgcggctgtggcaaaagtcctgctggaacatggagcctctccaaacgtcctgaat
atagttggactccgacctgtcgattatgcagcgactccagaaatgaaagagatcctgaaa
gtgagccctgaggcaccccatcctgtgaccgtgccactaacctcaccagccagcctctca
aagcctgcaggcgttatcaggagggatgtgcccgtcactgtgatgggtagtaaactgacc
cagccccagcagaaccagctcgtcaaagcagctcgtattctgggaggaaagcgagcggag
gccttttccagcgcagtcacccatgtggtcgtgccggatggtcctgtgcccaccactctg
accgcactgcagggcatcctcagcggctgctgggtcctcagcttcagctggctggctaat
tccctgcagcagcgcaggtggctggacgagagtgagttcgagcagggcgagggtccgcag
cgggctcgtgtgaacagggacaatctgctgccacggctgtttgatggctgttttttctac
ctgctgggatcgttccagaagcctccgaaagacgagctcctgcagctggtgaaggcggga
ggaggccagctcctcagccggcagcccaaaccggacagcgacgtcacccagacgctgagc
tcggcggcttaccacgcccagcccggctcggatcaggccttctgcacgcagtacatcctg
tacgaccctgagggctcctacagacccgaccgaatccgcctgggtaaagtgtggtcggcg
ccttctacctggcttgtggagtgcatcaaaaccttcagtctgctgcctgtaccagaactg
tag
DBGET
integrated database retrieval system
