Arvicanthis niloticus (African grass rat): 117694531
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Entry
117694531 CDS
T08817
Symbol
Hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04613
Neutrophil extracellular trap formation
anu05014
Amyotrophic lateral sclerosis
anu05034
Alcoholism
anu05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
117694531 (Hdac6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
117694531 (Hdac6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
117694531 (Hdac6)
09165 Substance dependence
05034 Alcoholism
117694531 (Hdac6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
anu01009
]
117694531 (Hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117694531 (Hdac6)
04131 Membrane trafficking [BR:
anu04131
]
117694531 (Hdac6)
03036 Chromosome and associated proteins [BR:
anu03036
]
117694531 (Hdac6)
Enzymes [BR:
anu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117694531 (Hdac6)
Protein phosphatases and associated proteins [BR:
anu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117694531 (Hdac6)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117694531 (Hdac6)
Membrane trafficking [BR:
anu04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117694531 (Hdac6)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
117694531 (Hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
PGC7_Stella
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117694531
NCBI-ProteinID:
XP_034341377
EnsemblRapid:
ENSANLG00005017897
LinkDB
All DBs
Position
X:11291350..11314471
Genome browser
AA seq
1141 aa
AA seq
DB search
MTSTGQDSSTRQRKTRHNPQSPLQDSSATLKRGGKKGAVPHSSPNLAEVKKKGKMKKLSQ
PAEEDLIMGLQGLDLNPETRVPVGTGLVFDEQLNDFHCLWDDSFPENPERLHAIKEQLIL
EGLLSRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLAGTYDSVYLHPNSY
SCACLATGSVLRLVDAVMGAEIRNGMAVIRPPGHHAQHSLMDGYCMFNHLAVAARYAQKK
HRTQRILIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEHGRFWPHLKASNWSTTGFGQGQ
GYTINVPWNQVGMRDADYIAAFLHILLPVAFEFQPQLVLVAAGFDALHGDPKGEMSATPA
GFAHLTHLLMGLAGGKLILSLEGGYNLHALAKGVSASLHTLLGDPCPMLESPVAPCASAQ
TSISCTLEALEPFWEVLEKSVEPQEENEVEGYMLEEEEEERRWETAALPMDPWPLLQNRT
GLVYDERMMTHCNLWDNHHPETPQRILRIMCHLEEVGLAARCLIIPARPATDAELLTCHS
AEYVERLRATEKMKTRDLHREGANFDSIYICPSTFACAQLATGAACCLVEAVLSGEVLNG
VAIVRPPGHHAEPEAACGFCFFNSVAVAARHAQVIAGRALRILIVDWDVHHGNGTQHIFE
DDPSVLYVSLHRYDHGTFFPMGDEGASSQVGRAAGTGFTVNVPWNGPRMGDADYLASWHR
LVLPIAYEFNPELVLISAGFDAAQGDPLGGCQVTPEGYAHLTHLLMGLAGGHVILILEGG
YNLASISESMAACTHSLLGDPPSQLTSLRPPQPGALASISEAIQVHRKYWRSLRLMKMED
KEECSSSRHVIKKLPPTASPVAAKEMTTPKGKVPKLSMQKITTALPAKESTLGQVKSEMA
MAGLAQGQSSEQAAKGTTLDLATSAAPTEDLAKQTTSQEAVGGTGPTPPASYASKPSRAS
KPSREASPLQGATAPQPLEFGFLRTLELSSEAQEAYDSEEGLLGEAAGGQDMNSLMLTQA
FGDFNAQEVFYAVTPLPWCPHLMAVRPIPAAGLNVFQPCKTCGTRQENWVCLTCYQVYCS
RYVNAHMVCHHEASEHPLVLSCVDLSTWCYLCQAYVHHEDLQDVKNAAHQNKFGEDMPHS
H
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaccggccaagattcttctaccaggcagcgaaagactaggcacaatccccag
tctcctcttcaggactccagcgccaccttgaagcgtggtggtaagaagggtgctgtaccc
cactccagccccaatctagcggaggtaaagaagaaaggcaaaatgaagaagctcagccaa
ccagctgaagaagacctaatcatggggcttcaagggctggatctgaaccctgagacacga
gtaccagttggtactggattggtgtttgatgaacaactaaatgacttccactgcctttgg
gatgacagcttccctgaaaaccctgagcggctccatgccatcaaagagcagctgatcctc
gagggcctcctgagccgctgtgtgtcctttcaggcccggtttgctgagaaggaggagctg
atgttggttcacagcctggaatacattgatctgatggagacaacccaatacatgaatgaa
ggagaacttcgagtattagcaggcacctatgattcagtttatctgcatccgaactcatat
tcatgtgcctgcctggctacaggctctgtcctcagactggtagatgcagtcatgggggct
gagattcggaatggcatggccgttatcaggcctcctggacaccatgctcagcacagtctt
atggatgggtattgcatgttcaaccatctggctgtggctgcccgctatgcgcaaaagaag
caccgcactcagaggattctcatcgtggactgggatgtgcaccatggtcaaggaacacag
ttcaccttcgaccaggaccccagtgtcctctatttctccatccaccgctatgagcatggt
cggttctggccccatctcaaggcttctaactggtccactacaggttttggccaaggccaa
ggatataccatcaatgtaccttggaaccaggtggggatgcgggatgctgactacattgct
gctttcctgcatatcctcctgccagttgcctttgagtttcagcctcaactggtcctggtg
gccgctggatttgatgccctccatggagaccccaagggagagatgtctgccactccagca
ggatttgcacacctaacccatttgctcatgggtttggcaggaggcaagttgattctgtct
ttagagggtggttataacctccatgcactggctaagggggtcagtgcttcactccacacc
cttcttggagacccttgccccatgttggagtcccctgttgcaccttgtgcaagcgcccag
acttccatctcctgcactctagaagcccttgaacccttctgggaggtccttgagaaatca
gttgagccccaagaggaaaatgaagtggaagggtacatgctagaagaggaagaggaggaa
cgccgctgggaaactgctgctctgccaatggatccatggccactgctccagaaccgcact
gggctggtctatgatgaaaggatgatgacccactgcaacctgtgggacaatcaccatcct
gagacacctcagcgcatcttacgcatcatgtgtcacctggaggaggtgggtcttgcagca
cgctgtctcatcatacctgcccggcctgccacggatgctgagctccttacgtgccacagt
gctgagtacgtggagcgtctccgggccacagaaaagatgaaaacccgggatctgcaccgt
gaaggtgccaactttgactccatttacatctgtcccagcacctttgcctgcgcacagctg
gccacaggcgctgcctgctgcctggtggaagctgtgctttcgggagaggttttgaatggc
gttgcaatagtgcgccctccaggacaccatgcagagccagaagccgcttgtggtttctgc
tttttcaattctgtagctgtggctgctcgccatgcccaggtcattgctggacgtgccctt
cggatcctgatcgtggactgggatgttcatcatggtaatggaactcagcacatatttgag
gatgaccccagtgtattatacgtgtccctgcaccggtatgaccatggcactttcttcccc
atgggggatgaaggtgccagtagccaagtaggccgagctgcaggtacaggcttcactgtc
aatgtgccctggaatgggccccgcatgggtgatgctgattacctggcttcgtggcatcgt
ctggtacttcccattgcctatgagtttaacccagaactagtgctcatttcagctggcttt
gatgctgcacaaggggacccactggggggctgccaagtgacgcctgagggttatgcccac
cttacccacctgctgatgggcctcgccggtggccatgttattcttattctagagggcgga
tacaacttggcatccatctcggaatctatggctgcctgcacccattccctccttggagac
ccaccatcccagcttacttcgctgcgacctccacagccaggagctctggcttcaattagt
gaggccatccaagttcatcgcaaatactggcgcagtttacggttgatgaagatggaagac
aaggaagaatgctctagttctaggcatgtcatcaagaagctgcccccaactgccagtcct
gtggcagctaaggaaatgaccacaccaaaaggaaaggttcccaaattaagcatgcagaag
atcacaaccgcattacctgcgaaagagtctactctaggccaggttaaatcagagatggcc
atggcagggcttgctcagggccagtcctcagaacaagctgccaagggaactacactggac
ctggccacctcagcggctcctacagaggacttagctaagcaaaccacctcacaggaggct
gtgggaggaactgggccaactcctccagcctcatacgcaagtaagccaagcagggcaagt
aagccaagcagggaagcctcacctctgcagggagccacagcccctcagcccctggagttt
gggtttctcagaactttggagctaagcagtgaggctcaggaagcctatgactccgaggag
ggcctgctaggagaagcagctggaggtcaggacatgaacagcttgatgctgacacaagca
tttggggattttaatgcccaggaagtattttatgccgtgaccccactaccctggtgtccc
catttgatggcagtacgccccattcctgcagcaggcctaaatgtgttccaaccttgtaag
acatgtggaacacgccaggagaactgggtgtgtctgacttgctatcaggtgtactgcagt
cgctatgtcaatgcccatatggtctgccaccatgaagcctctgaacacccattggtcctc
agctgtgttgacctgtctacctggtgttatctctgtcaggcttatgtccaccacgaggat
ctccaagatgtgaagaacgctgcccaccagaacaagtttggggaggacatgccccactca
cactaa
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