Asparagus officinalis (garden asparagus): 109836394
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Entry
109836394 CDS
T05243
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109836394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109836394
04121 Ubiquitin system [BR:
aof04121
]
109836394
03036 Chromosome and associated proteins [BR:
aof03036
]
109836394
03400 DNA repair and recombination proteins [BR:
aof03400
]
109836394
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
109836394
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
109836394
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
109836394
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
109836394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_6
zf-RING_UBOX
zf-C3HC4_4
zf-HC5HC2H_2
RTT107_BRCT_5
zf-C3HC4_3
zf-RING_5
zf-rbx1
zf-ANAPC11
CCP_MauG
Motif
Other DBs
NCBI-GeneID:
109836394
NCBI-ProteinID:
XP_020259870
LinkDB
All DBs
Position
4:complement(3867276..3875447)
Genome browser
AA seq
689 aa
AA seq
DB search
MGDSEALVRCLNPVILNLQKMELELKCPACLKLLDLPIMLPCSHIFCSHCIPTLIKSGSE
CPSCKLSFLNQENIADLRPAGHVKSLIIIYNDMKSAVAANFPQQKSEDRNFDKKVPTSEG
PSSDNNYVIDISQRELMHNMVREKLSDPQLYTSNTMTPREGKSNGPPMQRSGEEALIDGG
EQCSPPSFGSIKDSDCDNSDNGRQHQIKRSILTVKEKEVGNEPREHVETGRPKRQKLNSE
SDAGDKVGIGSVEFATPNPDCEHKHSDCSDTHPLETSKGLSANRTVECMFCHSFKTTEAS
GKMLHLLNGEGVGLDQATHPNVMNVHEKCIEWAPQVYFSGETVKNLKSELARASKIKCTS
CGLKGAALGCYVKSCKRSYHAPCAYNILECRWDCENYLVLCPAHASHKLPCDKSKKKSKS
NGKQSPDPSGTSGDLSSSSTPEHGNLTSSSIWDRHWVFCGSALSKEEKGLVEKLGRISES
DVTNMWKPTVTHVIASVDENGGCSRTLKFLMAILTGKWVLTIEWVKACIQAGHPVPEEPY
EVTHDVHGCFDGPKIGRSRAMEKAPKLFDGISFYIADDFQQPALKKYIEDLINAGDGELL
QKSGLVTIREAILDCDSDTIVQHYFNLPKVFVHSAEPPATTESGDFNDVLKQRSAEGEAW
ARDIGGHVLSHTSLLDSVAACHFDVNRLC
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgggggattctgaggcgttggttcgttgcttgaatccagtgattctcaacctgcagaag
atggaattggagctcaaatgtcctgcttgcttaaagttgttggatctgccaataatgcta
ccttgcagtcacattttttgcagtcactgcattcctactttaataaaaagtggaagtgaa
tgcccttcttgcaaattatcttttcttaatcaagaaaatattgcagatcttcgacctgct
ggccatgtaaagtcactgataatcatttacaatgatatgaagtctgcggtagctgctaac
tttcctcagcaaaagtctgaagatagaaattttgacaaaaaagtgcccacgagtgaaggt
ccatcatcagacaacaattatgttatagatatatcacaaagagaattaatgcacaacatg
gtcagagaaaaattatctgatccgcagctgtatacatctaacacaatgacaccaagagaa
ggaaagtcaaacggacccccaatgcaaagatctggggaagaagcattaattgatggagga
gaacagtgtagccctccgtcttttggcagcattaaggattcagattgtgacaacagtgat
aatggaaggcaacatcaaatcaagagatccattctcacggtcaaagagaaagaagttgga
aatgagcctagagagcatgttgagactggcaggcctaagaggcagaagttaaacagtgag
agtgatgctggagataaagttggaataggctctgtggagtttgcaacaccaaaccctgat
tgtgaacataagcacagcgactgctctgacacccatccattggagacttctaaaggttta
agtgcaaacagaactgtggaatgcatgttctgtcattcctttaaaaccactgaggcttca
ggaaagatgctacatttgttaaatggggaaggagtaggtttggatcaagctacacacccc
aatgtcatgaatgtgcatgagaaatgcattgaatgggcaccccaagtatatttctcgggc
gagactgtaaaaaatttgaaaagtgaattagctcgtgcttcgaagatcaaatgtaccagc
tgtggtttgaaaggggctgctcttggttgttatgtgaagagctgcaagagaagctatcat
gctccctgtgcatataacatcctagagtgccgctgggattgtgaaaattaccttgttctt
tgtcctgctcatgcttcacataagttgccgtgtgacaaatcaaagaaaaaatctaagagc
aatggaaaacaatccccagacccttctggtacatcaggagatctgtcttcatcatcaaca
ccagagcatggaaatttgacatcatcatctatctgggatagacattgggttttctgtggg
tctgctctttctaaggaagagaagggtcttgtggagaaacttggcaggattagtgaatca
gatgtaactaatatgtggaagccaactgtaacacatgtcattgcctctgtcgatgaaaat
ggtggatgcagcagaaccttgaagtttctcatggctattttaactgggaaatgggttctg
actatagagtgggttaaagcttgcatccaggctgggcatcctgttcctgaagagccctat
gaagtcactcatgatgtccatggttgctttgatgggcctaaaattgggagaagtcgagcc
atggaaaaggcgccaaaactatttgatggaataagcttctacattgccgatgatttccag
caacccgccttaaagaaatacattgaagatctcattaatgctggtgatggtgaactgtta
cagaagagtggacttgtgaccatccgagaagccattttagactgcgatagtgatactatt
gtacaacattacttcaaccttccgaaagttttcgttcatagtgctgaacctccagctacg
accgaatctggagatttcaatgacgttctgaagcagaggtctgccgagggtgaagcttgg
gcgcgtgatattggtggacatgtccttagtcatacttctcttctggatagcgtagccgcc
tgccattttgatgtgaatcgattgtgttga
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