Brachypodium distachyon (stiff brome): 100842545
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Entry
100842545 CDS
T01717
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100842545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100842545
04121 Ubiquitin system [BR:
bdi04121
]
100842545
03036 Chromosome and associated proteins [BR:
bdi03036
]
100842545
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100842545
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100842545
Ubiquitin system [BR:
bdi04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
100842545
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
100842545
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
100842545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
BRCT_2
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-RING_6
zf-C3HC4_4
RTT107_BRCT_5
zf-RING_5
zf-HC5HC2H_2
zf-rbx1
zf-RING_10
PTCB-BRCT
Kisspeptin
Motif
Other DBs
NCBI-GeneID:
100842545
NCBI-ProteinID:
XP_010231189
UniProt:
I1HHS7
LinkDB
All DBs
Position
2:complement(17765204..17770469)
Genome browser
AA seq
1026 aa
AA seq
DB search
MADMGSLEKMGRELKCPICLSLLRSAVSVTCNHIFCNDCLTESMKSASSCPVCKVPFRRR
EIRPAPHMDNLVSILKSMEVETGTNAVSTQVTSVVEVADGTEHANSGRRSKRLQKSKGQK
KIPSKKEANTMKPTAASASCPTKKPSFSTNKRIHVTPFPESETPMRPQKIMKPEEPKNKL
NDDAEHGKDAMASDKPGCFSLSPFFWLREGEDEGGTAETLSDPLSLDTPLRHNAPCYSDI
QDSDDKTPPIRTPNSKAAVPEVFDSEIFEWTQRPCSPELYSTPLKKQGSVKNIQDQIAEN
DDWEDLHLGGSFDKLGHASNAVPRVDAKEMKQKGKKARVRNSKSAKQPSRPKASMKEADA
NQQDSNCTRSLAGNSKNTKLPNRPMISIKETDVNQQDSNSTRILAAKLCEKNSIATKKNT
SNRRYKAFSNINPLPCSYDNSLKTFLPEEDKETEAHDDGISTKRTQKKGKKGQHKCARKL
GIIGNSTVEATESNPEPRSKRVRRMTDGGNAENIRVIAGSGSETEIPQLHSIIKGCTRNK
PSDARREKRKLSGEMKSKIGLESLKQNIGGNGLNILPGKCQGSETTQAASSAISASVENT
SAKGTEQSDCSGMKNFRKLQACNGRSTFLLKCDTVSKVSCAFCQSDDTTEESGEMVHYHN
GKRVPEEFSAGANVTHAHKNCLEWAPNVYFEDDSVFNLTAELTRSKRIKCACCGIKGAAL
GCFDKSCRKSFHFTCAKLIPECRWDTENFVMLCPLHQSSKLPNESSGGQKQSKRIVTPKG
PSQVRSSQDCSNNWKWASGPQKWVLCCSALSTAEKGIVSEFAKLTGVPISTSWSPSVTHV
IASTDLSGACKRTLKFLMAILYGKWIVSMDWVKACMDRMEPVDEQKFEVTTDVHGISEGP
RLGRQRVTNKQPKLFNGMQFYLHGNYTKSYRGYLQDLVVAAGGTILHRKPVSRDHQMLLD
NRCPVVIVYSVENQEKAKLAADDHRRQADDAWALACASGGKVASSAWMIDSIAACSLQPL
SLKALS
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcggacatgggcagcctcgagaagatgggacgggagctcaagtgccccatctgcctg
agcctgcttagatcggcggtatccgtcacctgcaaccacatcttctgcaacgattgcctc
acggagtcgatgaaatccgcttccagctgccctgtgtgcaaggtcccgttccgccgaaga
gaaatacggccagcaccacacatggacaatttagtcagcattttgaaaagcatggaggtt
gaaacaggaaccaatgctgtctcaacacaggtgacctctgtggtggaagttgcagatgga
actgaacatgctaacagcgggagaaggtctaaaaggttgcaaaaatcgaaggggcaaaag
aagataccatccaagaaggaagcaaacacaatgaagcctactgcagcttctgcatcctgc
cctactaaaaagccttctttctctacgaacaagagaatacatgtgacaccattccctgaa
tctgagactccaatgagacctcagaagattatgaagcctgaagagccaaaaaataaattg
aatgatgatgctgaacacggcaaagatgcaatggcttctgataaaccaggatgtttttca
ttgtcaccgtttttttggttaagggaaggagaagatgaaggtggcactgctgaaacatta
agtgatccactatcgttggatacacccttgcgtcacaatgcaccttgttatagtgatatt
caagattctgatgataaaacccctcctattaggactcctaatagcaaagctgcggtccca
gaagtctttgatagtgaaatctttgaatggacccagagaccttgctctccagagctttat
tcaactccactgaaaaagcagggtagtgttaagaatatacaagatcaaatagcagagaat
gatgactgggaagatttgcatctgggtggttcatttgataagttaggtcatgcaagtaat
gcagttcctcgtgtcgatgcaaaagaaatgaagcagaagggaaagaaggcaagagttagg
aacagcaagtcagcaaagcagcccagtcgtccaaaggccagtatgaaagaagctgatgcc
aatcaacaagattcaaattgcactagaagtcttgctggcaacagcaagaacacaaagtta
ccaaatcgcccaatgatcagcataaaagaaactgatgtcaatcaacaagattcaaatagc
actagaattcttgcagcaaagttgtgtgagaaaaacagtattgcaaccaagaagaacact
tcaaatagaagatacaaggcttttagcaacatcaatccacttccttgctcttatgacaac
tctttgaagacatttcttcctgaggaagataaggagaccgaagcgcatgatgacgggatt
tccacaaaaagaacccagaaaaaggggaaaaaaggtcaacataaatgtgcaaggaagttg
ggaataataggtaatagtacagttgaggctacagagagtaacccggagccaagaagtaag
cgagttagaagaatgactgatggtggcaatgccgaaaacataagagttattgcaggctct
gggagcgaaacagaaattccacaactccacagcatcataaaaggctgcacccgaaacaaa
ccctcagatgctagacgtgaaaagagaaaacttagtggagaaatgaaaagtaagattgga
ttagagagcttgaaacagaacattggtggaaatggattaaacatcttacctggcaaatgc
caaggtagtgagacaacacaagcagcttcttcagcgataagtgcatcagttgaaaacact
agtgcaaaaggtactgaacaatcagattgttcaggaatgaaaaacttcagaaagcttcag
gcctgcaatgggcgtagtactttcctgttgaaatgtgatactgtttctaaggtttcatgt
gctttctgccagtctgatgacactacagaggagtctggggagatggttcactaccataac
ggaaaacgagtccctgaagagttcagtgcaggggctaatgtcacacatgctcacaagaac
tgcttggagtgggctccaaatgtctactttgaagatgactcggtgtttaatcttacggct
gagttgactagaagcaaaaggatcaaatgtgcttgctgtggaattaaaggtgccgcactt
ggatgctttgacaagagttgtcgaaaaagcttccacttcacatgtgctaaattgatccca
gaatgtagatgggacactgaaaactttgtgatgctatgccctttgcatcagtcttcaaag
ttgcctaatgaatcctccgggggacaaaagcaatctaaaaggatagtgacaccaaaaggt
ccatctcaagtaagatctagtcaagattgtagtaataactggaaatgggcatctggacca
cagaagtgggttctctgctgttcggctctttctactgctgagaagggaattgtatcagag
tttgcaaaattaaccggtgtgcctatttccacaagctggagtcccagtgttacccatgtt
attgcatcaaccgacctctctggtgcttgcaagcgcacactgaagtttctgatggcaatc
ttgtatggcaaatggattgtctccatggactgggttaaggcttgcatggaccgcatggaa
cctgttgatgagcagaaatttgaagtcactacagatgttcatgggattagtgagggtccc
agattaggaagacaaagagtaacaaacaagcaaccaaagctgttcaacggcatgcagttt
tacctccatggaaactacacaaaatcctacagaggttacctgcaagaccttgtggttgca
gccggtggcaccattctgcaccggaagcccgtctcaagagaccatcagatgttgctggac
aacaggtgcccggtcgtcatcgtctacagtgtcgagaatcaagagaaggcgaaacttgct
gctgatgatcacaggaggcaggctgatgatgcttgggccctagcctgcgcttctggtggc
aaagttgcgagcagtgcttggatgatcgattcaatagcagcttgcagcctgcagcctctg
agcttgaaggccctttcctag
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