Benincasa hispida (wax gourd): 120077624
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Entry
120077624 CDS
T07258
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120077624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120077624
04121 Ubiquitin system [BR:
bhj04121
]
120077624
03036 Chromosome and associated proteins [BR:
bhj03036
]
120077624
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120077624
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
120077624
Ubiquitin system [BR:
bhj04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
120077624
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
120077624
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
120077624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_6
zf-C3HC4_4
Prok-RING_4
zf-HC5HC2H_2
zf-RING_5
PTCB-BRCT
RTT107_BRCT_5
zf-RING_10
zf-Nse
Motif
Other DBs
NCBI-GeneID:
120077624
NCBI-ProteinID:
XP_038887493
LinkDB
All DBs
Position
5:complement(3517360..3522559)
Genome browser
AA seq
681 aa
AA seq
DB search
MADFSTNARSNANTTRFLNPWLLHFQKMGLELKCPLCLNFFDDPVLLPCNHLFCKSCMPF
AAQFGSVCPLCKAGFVDRDMRPAPFMDKMVSIYRSLDATFSTNMSKLVSTDVGADVEQSR
FGQSVSYVVNNCKEFEGCSKPVDCKRENLDIDGRKGKYGRSEDCRMPPVSQADQLSAGSP
PYFGDGKVSDDSSDECRGHGSKNTSDRISVITNADDNKLQLSKCMSSASEEAGHLRDLKR
QKLNYDQLKLGISSADQTHPPVSEPGNSETSNSEMEHKTQVTVASSMPLADADAIVRNVK
CAFCQSSKVTEDTGPFLHYMNGSLVNGVEAANPNVIHVHKLCVDWAPQAYYQGDDVHNLK
AEVARGSKLKCCKCGLKGAALGCYLKSCHRSYHVPCALEIEECRWDMDNFLLLCPSHTST
RFPDERSKPRKMARNQASPFQMNQQDLSNWVSPPDGVNKWTFCGSALSGEERNILVKFAK
LSGATVSKLWKPDVTHVIASTDENGACTRTYKVLMGILNGIWILNMDWVKACMKEKRPLN
EEAYEIALDNYGCTDGPKSGRLRVLNKEPKLFIGLSFYFTGDFPPAYEEDLQDLIITAGG
TVLENEDLAATSCNGQAAPKVLVVYNLDSPGGCKVGEEVSILWQRMNEAEGIAAKLGAQV
IGHTWLVESIAASNLQPFVSC
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcggatttctcaaccaatgcccgttctaatgctaatactaccagattcttgaaccct
tggcttcttcatttccagaaaatgggacttgaactcaagtgtcctctctgcttgaacttc
tttgatgatccagttctgcttccttgcaatcacctcttttgcaagagttgcatgccattt
gcagcccagtttggatcggtgtgccctctatgcaaagcagggtttgtcgaccgagacatg
aggcctgctcctttcatggacaagatggtgtcaatttacaggagtctggatgcgacattc
tctacaaatatgtctaaactagtttcaactgacgttggggcagacgtggagcaatcacgt
tttggtcagtctgtttcttatgttgtcaacaactgcaaggagtttgagggatgcagcaag
cctgttgactgtaaacgtgaaaatcttgacatcgatggtagaaagggtaaatatgggagg
agtgaagattgtagaatgccacctgtaagtcaggcagaccagttatcagcaggaagccca
ccttacttcggtgatggcaaggtgtcagatgacagtagtgatgagtgccgtggtcatgga
tctaaaaacacttcagaccggatatctgttataaccaatgctgatgacaataagctgcaa
ttgtcaaagtgtatgagctctgcttctgaagaggcaggacacctgagggacctcaagaga
caaaagttgaattatgatcagttaaagttaggcataagcagtgctgatcaaacccatcct
ccagtttctgagcctggaaattcagagacttcaaattctgagatggaacacaaaactcaa
gtaactgttgctagcagcatgcctcttgctgatgcagatgccattgtgagaaatgtcaaa
tgtgcattttgccagtcatctaaagttacagaggatactggacctttcctacattatatg
aatggcagcttggttaatggagttgaggcagcaaatccaaatgtcatacatgttcacaaa
ctttgtgttgattgggcaccgcaggcatactatcagggtgatgatgtccataatttgaag
gctgaagtggcaaggggttcaaagcttaagtgctgtaaatgtgggctaaaaggagcagcc
cttggttgttatttgaagtcttgccatagaagctatcatgttccttgtgcacttgaaata
gaggagtgccgttgggacatggataattttcttcttctttgcccctcacatacgtccaca
agatttccagacgaaaggtctaagcctaggaagatggcaagaaatcaggcttcaccattt
caaatgaaccagcaagatttgagcaattgggtatctccaccagatggggtaaacaaatgg
acgttttgtgggtcagctctgtctggtgaagaaaggaatattctggtcaagtttgcaaag
ctatctggtgctacagtttccaaattgtggaagccagatgtgactcatgttattgcgtcc
acagatgaaaatggtgcatgtactcggacatataaagtccttatgggcatattgaatgga
atatggattctgaacatggattgggtaaaagcttgcatgaaagaaaagcgtccattgaat
gaggaagcttatgaaattgctcttgacaactacgggtgtactgatggtcccaagtctggc
aggctgagggttctaaacaaagaacccaaactcttcattggcttgagtttctatttcact
ggtgattttccaccggcctacgaggaggatcttcaagatttgataataactgctggaggt
accgtattagagaacgaagatttggcagcaacaagttgtaatggccaggctgcaccaaag
gtgttggttgtttataatctcgattctcctggaggatgcaaagtgggggaggaggtttct
attctctggcaaagaatgaatgaggcagagggaatagctgctaaacttggagcccaagtc
atcggtcatacatggcttgtggaatccattgcagcgagtaacttgcaaccttttgtcagc
tgctaa
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