Brassica oleracea (wild cabbage): 106324492
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Entry
106324492 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106324492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106324492
04121 Ubiquitin system [BR:
boe04121
]
106324492
03036 Chromosome and associated proteins [BR:
boe03036
]
106324492
03400 DNA repair and recombination proteins [BR:
boe03400
]
106324492
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
106324492
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
106324492
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
106324492
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
106324492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-HC5HC2H_2
zf-C3HC4
RTT107_BRCT_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-RING_10
zf-RING_6
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
106324492
NCBI-ProteinID:
XP_013617910
LinkDB
All DBs
Position
C1:8616950..8621325
Genome browser
AA seq
898 aa
AA seq
DB search
MGDVSHLEKMGRELKCPICLSLFSSAASLSCNHVFCNGCIVKSMKVDATCPVCKIPFHRR
EIRGAPHMDSLVSIYKNMEDASGVHMFVSLNIPSPSEKEKHVGDASIEKANDKKHQGSSK
SRISKKRGFTKNKEKDLDPPGPIVMKPSSQTKKRVQLLQNQSSENSTESVESAEKLKDST
EETVIRLNEHTSLNKEENMAPFFWLRDENDEENLSQPAESDPFLDVTPVDVPSFSDLKDS
DHDSPSKAVEQERPNPKDMFDSEMFEWTQRPSSPEILPSPVKAKALGKDATQMNLPKGAS
SNKKRKAGTARNTVAKRLDGVSKEDYVEPSLGASISEKQETGGTSGTSTRKDENVKAKRA
TRNKGQTSRVQAGVNTHVEAEAKQGTKRKRSSVKVSPDPPVSESNELSLGTEDVGKGDQE
LTHGSAGTQPTEKYSLRKRRKSSASSFPKYSSATQPRGKKILSEELNQVEDRQDLTNQKK
PSVDNGTHTMQVSEKSSTMNKPSLGDNALLRRCDGPPINKSTCAFCQSSEDTEASGEMAH
YHRGEPVSADFSGGSKVIHAHKNCAEWAPNVYFNNLTAVNLDAELTRSRRITCSSCGLKG
AALGCYNASCKSSFHVTCAKLIPECRWDNENFVMLCPSDASSKLPCEETSPKERKRKRTP
PKRPQHSQPNQVSEKPDISELQSKPFHGVSKKLVLCCSGLTDEEKSVISEFAEVSGVTIS
RKWEPRVTHIIAXNGACKRTLKFMMGVLEGKWILSIDWIKACMNNREYVTEEPYEISTDV
HGTRQGPYIGRQRALKKEPKLFNGLKFYIMGDFEVAYKGYLQDMIVAAGGTILRRRPISN
DDSEASTIIVFSVEPSKKKTLTQRRFDAEALAKSSRARAASSSWVLDSIAGCQILDLI
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgtaagtcacctggagaagatgggaagagaactcaagtgccctatttgcttg
agtctatttagttctgcagcttcactttcgtgcaaccatgtgttctgcaatggatgcata
gtgaagtccatgaaagtggatgctacttgtccagtttgtaaaatcccattccatcgtaga
gagattcgaggtgctcctcatatggatagcttggtgagcatttacaagaacatggaagat
gcttctggtgtccacatgtttgttagcctgaatataccatcaccttcagaaaaagaaaag
catgtgggagatgcttccattgaaaaggctaatgataagaaacatcagggttctagtaag
agccgaatatccaagaagagagggtttacaaaaaacaaggaaaaagatcttgatccccct
ggacctattgttatgaaaccttcatcccaaaccaagaaaagggttcagttgttgcagaat
caatcttctgaaaactcaacagaatctgttgagtcagctgagaaactcaaggattcaact
gaagaaactgtgattcgcttgaatgagcatacgagtctgaataaagaagaaaatatggca
cccttcttttggttgagagatgaaaatgatgaggagaacttaagtcagccagcagaaagt
gatccgtttctagacgttacacctgttgatgttccttctttcagcgatttgaaggactca
gatcatgacagcccgtcgaaagcagttgagcaagaaaggcccaatccaaaagacatgttt
gacagtgaaatgtttgagtggactcaaaggccctcttctccagagattctacctagtcct
gtgaaggccaaggccctaggtaaagatgcgactcaaatgaatctacctaaaggagcatca
tccaataaaaaacgcaaagccggaactgcaagaaacacagttgctaaacgactcgatggg
gtttccaaggaggactacgtggaaccgtcgttaggagcaagtattagtgagaaacaagag
accggtgggacttctggcacatctaccaggaaggatgaaaatgtgaaagctaaacgagct
acaagaaacaagggccagacttcacgagttcaggctggtgtaaatacacatgtggaagca
gaggcaaagcaggggacaaagaggaaacgatctagcgttaaagtctctccggatccccca
gtttctgaatctaatgagctctcacttggaacagaagatgttggaaagggggatcaggaa
ctaacccatggttcagctggtacacaacccaccgagaagtactctctgagaaagagaaga
aaatcaagtgcatcttcctttccaaaatattcttctgctacacaaccgcgtggcaagaaa
atccttagcgaagagttgaatcaagtggaagatagacaagatttaactaaccaaaagaaa
ccgtctgtggataatggcactcataccatgcaagtttcagagaaaagctcaacgatgaac
aagccctcacttggagataatgcgcttttgcgacgatgtgatggacctccaataaataaa
tccacatgcgccttttgtcagtcttcagaagacacagaggcatcaggagaaatggctcac
taccacagaggtgaacctgtctctgcagattttagtggtgggtctaaggtcatacatgct
cacaaaaactgtgctgaatgggctccgaatgtgtacttcaacaaccttacggcagtcaac
cttgatgcggagctgacaagaagccggaggataacttgcagtagctgtggactcaaaggc
gcagcacttggctgttacaatgcgagttgcaagagtagctttcatgtgacgtgtgcaaag
ctgataccagaatgcagatgggacaatgaaaactttgtaatgctatgcccttcggatgca
tcctctaagttgccctgtgaagagactagtcctaaagaaagaaaacgcaagcgtactcct
cctaaaaggccacagcactctcagcctaatcaagtatctgagaaacctgacattagtgag
ctccagagcaagccttttcacggagtatccaagaaactggttctatgctgttcaggactt
acagatgaagagaagagtgtgatttcggaatttgctgaagtgtctggagttaccatctcg
agaaaatgggagccaagagttacacatatcattgcanntaatggagcctgcaaaagaacc
ctcaaattcatgatgggggtcttggaggggaaatggattctaagcattgattggatcaag
gcctgtatgaataacagagaatatgtaaccgaggagccatatgagatttcgacagatgtt
catggaacacgacaaggaccttatattggaagacaaagagctttgaagaaggaaccaaaa
ctttttaatgggctgaagttttacataatgggagatttcgaggttgcttacaaagggtat
cttcaagatatgattgtagcagcaggtgggactattctgcgcaggcgacccatttctaat
gatgatagtgaagcttcgacgatcatagtgtttagtgttgagccaagcaagaagaaaact
ctgacacaaagaagatttgatgctgaagccctggctaagtcttctagagcaagagctgca
agcagttcatgggtcttggattctattgcaggttgccaaattctagacttgatatag
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