Bombus vancouverensis nearcticus: 117161718
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Entry
117161718 CDS
T07628
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
bvan
Bombus vancouverensis nearcticus
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bvan01009
]
117161718
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117161718
04131 Membrane trafficking [BR:
bvan04131
]
117161718
03036 Chromosome and associated proteins [BR:
bvan03036
]
117161718
Enzymes [BR:
bvan01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117161718
Protein phosphatases and associated proteins [BR:
bvan01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117161718
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117161718
Membrane trafficking [BR:
bvan04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117161718
Chromosome and associated proteins [BR:
bvan03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
117161718
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
DUF604
Motif
Other DBs
NCBI-GeneID:
117161718
NCBI-ProteinID:
XP_033199337
LinkDB
All DBs
Position
Unknown
AA seq
1160 aa
AA seq
DB search
MSDSVICKNLYSAVKQLADSEIELIKAIENSEKINNRNIKNTMSVTDKKSAKNSAKMFNV
RPSAALIAAKHEATQRVLQRKKSNNVFVHDIYQKAIDAYNIKRKETGIVFDRSMTEHKCL
WDPSYPECPARLIRVMQRCEELGLINRCKFITPRQASEDEILMKHSQEQIDILKATDKCT
DVDSLELLSSTYDAIYIHPSTYQLSLLAVGSTINLVESICKEEIQNGMAIIRPPGHHAMK
SEYCGYCFFNNVAIAAEKVLSSNLASKILIVDWDIHHGQATQQMFYNDPRVIYFSIHRYE
NGEFWPNLRESNFHFVGDGLGEGYNFNVPLNKTGMTNADYLAIFQQVLLPMAYEFQPDLI
IVSAGYDAALGCPEGEMLLTPACYAHLLSSLLSLACGKVAVILEGGYCLKSLAESAALTL
RTLLGDPCPMLETLTLPSISVRDTILNTIYAHKPYWKCYQYQDTYSINSTTNNKEGSTNQ
YLPVVTFKGTDIKPEVYETRNCYPTQNKEVIEMIEKQLNTLIQFTNLSKAPNKVCIVYDD
RMLKHCDMSNDNHPEKPHRINIIYKKYQECNLLDRCYVQQGRSATREELILVHSKEYIDS
IKDTENLKPKELKRQAETYNSVYLHPETWTSACISTGSLLQVVDSVLNGESQSGIAIVRP
PGHHAAENTACGFCIFNNIAVAARYAVEFHHVKRVLIVDWDIHHGNGTQSIFEEDPKILY
MSVHRYDNGNFFPNSKRANYSYVGSLSGEGFTVNIPWNKKGMGDAEYIAAFQQIIMPIAY
QFNPELVLVSAGFDACIGDPLGGCFVTPEMYGHLTHWLSSLANGRIILSLEGGYNINSVA
HAMAICTKSLLGDPLPILENGQTPCTSAIHTINNVIKTQKQYWAHLVFNLSLPKERVLPK
PKVPHIKTNERVIDSEEILKHSESKIALEEIETEKMQTRQKNLTTWKLINKVASQEDCEK
LQEFLKSVHERRTHTTINTSYNDEGSKYTKKCMNQDEEEGHSDENITNFAAGSSGEQGER
ASAQMTGNKSLHDYLLENSQALVDGDMFAVIPLRECPHLDSVKDVPVSGIDIYSPCIECE
SNVENWICLQCYTVHCARSINQHGLIHAEEMEHPLALSFSDLSVWCYKCEAYIDNVQLFA
ARNAAHQSKFNEELPWTYEI
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattctgtaatctgcaaaaatttatactctgctgttaaacaattagcagacagt
gaaatcgagttaataaaagctatagaaaattcagagaagataaataatagaaatattaaa
aatactatgtctgtgacagataagaaaagtgccaaaaattctgcaaaaatgtttaatgtt
cgtccatctgctgctttaatagcagctaaacatgaagcaacacaacgtgtattacaaaga
aagaaatctaacaatgtttttgtacatgatatatatcaaaaagctattgatgcatataat
ataaaaaggaaggaaactggcattgtatttgatcgttctatgacagaacataaatgcctt
tgggatccaagttatccagaatgtcctgctaggttgataagagttatgcagagatgtgag
gagttaggtttaataaatagatgtaaattcattacaccaagacaagcctcagaggatgaa
atactaatgaagcacagccaagaacagatagatattttgaaggctactgataaatgtaca
gatgtagatagtttagaattattatcatcaacatatgatgccatttatatacatccttct
acttatcaattatctttgttagctgtgggttcaacaataaatttagtggaaagcatttgc
aaagaagaaattcagaatggtatggccattataaggccaccaggacatcatgcaatgaaa
tcagaatattgtggatattgtttcttcaataatgtcgcaattgctgctgaaaaagtttta
agtagcaatttagctagtaaaattttgattgttgattgggatatacaccatggacaagct
actcagcaaatgttctataatgacccacgagtaatttatttttcaattcaccgttatgaa
aatggagaattttggccaaatcttagagaatctaatttccattttgttggagatggttta
ggagaaggatataattttaatgtgccacttaataaaactggcatgaccaatgctgattat
ttagccatatttcaacaagttttattgccaatggcctatgagtttcaacctgatcttata
atagtatcagctggatatgatgcagcgttgggctgtcctgagggtgaaatgttactaaca
cctgcatgttatgctcatttactatcatcattattgagtttagcctgtgggaaagttgct
gttatattggagggtggttattgtttaaaatcattagcagaaagtgcagcattaacacta
cgtactttgttaggtgatccatgccctatgttagaaactcttacattaccttcaataagc
gtacgtgataccattttaaatacaatttatgcacataaaccatattggaaatgctatcaa
taccaagatacatacagtattaatagtacaacaaataataaagaaggaagtactaatcaa
tatttaccggtagttacattcaaaggaactgatattaagcctgaagtgtatgagactcga
aattgctacccaactcaaaataaagaagttatcgaaatgatagaaaagcagttaaataca
ttaatacagtttactaatttatctaaagcacctaacaaagtgtgcattgtttatgatgat
agaatgttaaaacattgtgatatgtctaatgataatcatccagaaaaaccacatcgtatt
aatattatttataaaaaatatcaagagtgcaatttacttgatcgatgttatgtgcaacag
ggacgaagtgcaacaagagaagaattaatattagtccattcaaaagaatatatagattca
ataaaagatacagaaaacttaaaaccaaaagagctaaaaaggcaggcagaaacttataat
tcggtttatttgcatcctgaaacctggacaagtgcctgtatatcaactggatcattatta
caagtagttgatagcgtattaaatggagaaagtcaatccggtattgctattgttaggcct
ccaggccatcatgctgcagagaatacagcatgtggtttttgtatctttaacaatattgct
gtagcagctagatatgcggtagaatttcatcatgtaaaaagagtattgatagtagattgg
gatatacatcatggtaatggaactcaatccatctttgaggaagaccctaaaattttgtat
atgtctgtccatcgttatgataatggcaatttttttccaaattctaaacgagcaaattac
tcttatgtcggttctctatcaggagaaggtttcactgttaacattccatggaataagaaa
ggaatgggcgatgcagaatatatagcagcatttcaacagataataatgccaattgcttat
cagtttaatccggaattagtcttagtttctgcgggttttgatgcatgtattggggatcct
ctaggaggttgtttcgtgacaccagaaatgtacggacacttaacacattggctatcttct
ttagctaatggtcgtattattcttagtcttgaaggaggttacaatattaattcagtcgcg
catgcaatggctatttgcacaaaatctttgcttggtgatcctttaccgatattagagaat
ggacaaactccatgcacgagcgctattcacactataaataatgttataaaaacacaaaaa
caatattgggcgcatttagtatttaatttatctttaccgaaagagagagtacttcctaag
cccaaagttccacatataaagacaaatgaacgtgttatagacagtgaagaaatattaaag
cattcagaatctaagatagcattggaagaaatagaaacagaaaaaatgcaaactaggcag
aagaatcttacaacttggaagctgataaataaagtggcctcacaagaagattgtgagaaa
ttacaagagtttcttaaatctgtacatgagcgacgtacacatacgacaattaatacttct
tataatgacgaaggttccaagtatacaaagaaatgcatgaatcaggatgaagaagaagga
cattctgatgaaaatattaccaattttgctgctggtagtagtggtgaacaaggcgaaaga
gcaagtgcgcaaatgactggaaataaaagtttacatgattatttgttggaaaattcgcaa
gcattagtggatggagacatgtttgcagtgatacctttacgagaatgtccacatttggat
agtgtcaaggatgtaccagtttctggaattgatatatattcaccatgtatagaatgtgaa
agcaatgttgaaaactggatctgtttacagtgttatactgttcactgtgctcgtagtatt
aatcaacatggtttaatacacgctgaagaaatggaacatccattggccctaagtttcagt
gatttatcagtttggtgttacaaatgtgaggcatacatagataatgtgcaattatttgcc
gcgcgcaatgctgcacatcaaagtaaatttaatgaggaattaccatggacatatgaaata
taa
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integrated database retrieval system
