Capsicum annuum (peppers): 107873646
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Entry
107873646 CDS
T04646
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107873646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107873646
04121 Ubiquitin system [BR:
cann04121
]
107873646
03036 Chromosome and associated proteins [BR:
cann03036
]
107873646
03400 DNA repair and recombination proteins [BR:
cann03400
]
107873646
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107873646
Ubiquitin system [BR:
cann04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
107873646
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107873646
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107873646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-HC5HC2H_2
RTT107_BRCT_5
zf-C3HC4_3
Prok-RING_4
zf-RING_2
PTCB-BRCT
zf-C3HC4_4
zf-RING_6
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
107873646
NCBI-ProteinID:
XP_016576062
LinkDB
All DBs
Position
6:2456135..2468116
Genome browser
AA seq
707 aa
AA seq
DB search
MGVEEAKDIARFLNPLAFHIQKLGLELKCPLCLNLLTKPRLLPCDHIFCNFCVPSSIQAQ
CECPICKHQYVDEEIRAVPHMESMISIFRSLDTTFNAKLFQFQSPDSGRSLEQSNVSVNA
DKSRIEQSIKAILSSNDSIKEINRHNGHGMPWNVVNQLGLLPSSNRKEDIKDDRYNAEEI
DLNQLQQQSPGSAHSSDSNKDIVKENSELRDVKSHTAKRLVEDSSDVVPFLKKQDTPVVS
KDLVHHTVMRDDVFPERDVKRQKKLNYGLPEMALQSYDGHNQQRESCSRIISNSDHNLTC
KLSESSIVAYPEEVSDQHHLERSVCAFCHQSKITEGTGPMQHYSKGREVVVDAASLSNAI
PVHMKCIDWAPQVYYDGDIIKNLEAELARAAKLKCSVCGLKGAALGCLVKSCRRSYHRPC
AFELQDCRWDCDNFVMLCPSHKSVKFPSEKPKSRKRTSTEACPEPAPLTSERSNFWATLS
DGPKEWILCGSALSSEEKYMLVKFANMCGATVCKSWDPRVTHVIAATDEKGACTRTLKVL
MAILSGKWILTIDWIKACIQENYPVNEEPYEVNLDNHGCFGGPKSGRLRASSSAPKLFDG
LKFYLSGEYVPAYKTDLLDLVEKAGGSIIHTNEQLISLTDAMQATNSACLVVYNSDPPRG
CAFGEASNILLQRQAKAEELAKPIGCQVIQHTWILESIATCKMAPFS
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgggagtggaggaggctaaggacattgctaggtttctaaatccattagcatttcatatt
cagaagttgggtcttgaactcaaatgccctctttgcttaaacttgctgactaaacctagg
ttgcttccttgtgaccatattttctgcaacttttgcgttccaagctcgatccaagctcaa
tgtgaatgccctatatgcaaacatcaatatgttgatgaagaaataagggcagtgcctcac
atggagagtatgatatccatattcagaagcttagatactactttcaacgctaaactcttt
cagtttcaatctcccgattctggaagatcactagagcagtctaacgtttctgttaatgct
gataaatcaagaatcgagcaatctatcaaagccatattaagcagcaatgattcgatcaag
gagattaataggcacaatggacatggaatgccttggaatgttgtgaatcagttaggtctc
ttgccttcttccaacaggaaggaagacataaaagatgataggtataatgcagaagaaata
gatctgaatcaattgcaacagcagtcaccaggaagtgctcattcatctgatagcaacaaa
gatatagtcaaggagaacagtgaactaagagatgtaaaaagccatactgcaaagaggctt
gtagaagacagttcagatgtggttccatttctgaaaaaacaagataccccagttgtgtcc
aaagatctagtgcaccacacagttatgcgtgacgatgtgtttcccgaaagggatgtgaag
aggcaaaagaaactgaactatggattgccagagatggccttgcaaagttatgatggtcat
aatcaacaaagagaatcttgttcaagaattatttccaactcagaccacaacttgacatgt
aaattgagtgaatcttctattgttgcttatccagaagaagtttcagatcaacatcatctc
gaacgaagtgtttgcgctttctgccaccaatctaagataacagaggggactggaccaatg
cagcactactcaaaaggaagggaggtggtggtagatgctgcttcactttcaaatgccata
cctgtgcatatgaaatgtattgactgggcacctcaagtatattatgatggagacatcata
aaaaatttggaggctgaattggcaagagctgcaaaactcaagtgtagtgtctgtggccta
aagggtgcagcacttggctgccttgtgaaatcttgccggaggagttaccataggccctgt
gcatttgaactgcaggactgtcgttgggattgtgacaactttgtaatgctatgcccgagc
cataaatctgttaaatttccaagtgaaaagccaaagtctaggaagcgtaccagtactgaa
gcatgtccagaacctgctcccctaacatctgaaagatcaaatttttgggcaacattgtct
gatggacccaaagaatggattctatgtgggtctgctctatcctcagaagagaagtatatg
ctggtcaaatttgccaatatgtgcggtgcaactgtgtgcaagtcttgggacccaagagtc
actcatgtcattgcagcaacagatgaaaagggtgcatgcaccagaacactgaaagttctc
atggcaattttgagtggaaaatggatcctaacaattgattggataaaagcctgcattcaa
gaaaattatcctgtaaatgaagagccttatgaagttaacctggacaatcatggttgtttt
gggggtcccaaatctggtagactcagggcctcatctagtgcacctaagctttttgatggt
ttgaagttctatctgagtggggaatatgtcccagcatacaaaactgacctgttagatcta
gtcgaaaaggctggtggttcaataattcacaccaacgaacagttgatttccctgaccgat
gctatgcaagcaactaactcagcttgtctagttgtttataacagcgatcctccacgtggt
tgtgcattcggggaagcaagcaacattttgctgcaacgacaagcaaaggccgaggaacta
gccaagcccatcggttgtcaggtcattcagcacacatggattctggagtccattgctaca
tgtaaaatggcgcctttcagctga
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