Corylus avellana (European hazelnut): 132165998
Help
Entry
132165998 CDS
T09426
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132165998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132165998
04121 Ubiquitin system [BR:
cave04121
]
132165998
03036 Chromosome and associated proteins [BR:
cave03036
]
132165998
03400 DNA repair and recombination proteins [BR:
cave03400
]
132165998
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
132165998
Ubiquitin system [BR:
cave04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
132165998
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
132165998
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
132165998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4
zf-RING_10
zf-RING_6
PTCB-BRCT
zf-RING_2
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
132165998
NCBI-ProteinID:
XP_059432718
LinkDB
All DBs
Position
ca11:1598163..1604307
Genome browser
AA seq
717 aa
AA seq
DB search
MGDSVSGGGGSRFLNPWVLHFQKMGLELKCPLCLSLLDRPMLLPCNHIFCNSCIPISTQL
KSECLVCKAHYFNQDSRPAPYLENLVTIYRGLEATFSANFFQHVSSGSGRILEQCQTLRK
EAFETIQGDKSCSGQSIFSLSANKRVQVPLNLNRSVEDGVSKNDEYEKHSMPTDGKDGKG
GRGGDKLNHVVSSNLSSLNLPAGPGWLEEPNVVEIEMNQVAQSLPNTPPSIGDAKGSDGD
SHDQGNEHSPNNYLTKRAITKDSEDKIRQLGHDGSASETEGGHLRSIKRQKKFDYGTSEL
SMKADGCIPPLVSLSEILPTPSSEFEVASRVPCAAAQQPVISDASFVHKSICAFCQSPEI
SEHTGPMLHYANGKMVVGDEATLSNVIHVHRLCVDWAPQVYFDNETIKNLKAEVARGAKL
KCSRCGQKGAALGCYAKSCRRSYHLPCAGQVSNCRWDHEKFLMLCPTHSSFKFPNERSRG
PQQSKLWAAPKRAKKWVICGSALSSKEKVLVIEFASMCGATVTKYWEPNVTHVIAATDAQ
GACTRTLKVLMAILNGRWVLNIDWIKACMEAMHPVDEVPYEVCLDNHGCSDGPKTGRLMA
SNNAPKLFDGFKFYFSGDFVPEYKDDLQTLVVTAGGTVLKSKEELPSQSCEEEALVRVLI
VYNLDSPQGCKVGEEVDILWNRLSEAQDVASDIGSQVIGHTWLVESIAACKLQPLVS
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgggagactcagtgagtggtggtggtggtagtagatttctgaacccgtgggttcttcat
ttccagaagatgggtctcgagctcaagtgccctctctgcttaagcctgctcgacagacca
atgttactcccctgcaatcacattttctgcaattcctgcatacccatttcaacacagctt
aaatcagagtgtctcgtctgtaaagcgcattatttcaaccaagattcaaggcctgcgcct
tacttggaaaatctggtaacaatctacaggggtttggaagctactttcagcgccaatttc
tttcagcatgtttcttctggttctgggaggattttggagcaatgccagactttgcggaag
gaagcatttgaaactatccaaggggataaatcatgcagtggacagtccatcttctcatta
tcagctaataagcgagttcaggttccattgaatttgaatcgttctgttgaagatggggtc
agcaagaatgatgaatatgagaaacacagcatgccaacagatggtaaagatggtaaaggt
ggtaggggaggagacaaacttaatcatgtagtgagtagtaatctgtcatcactgaatttg
cctgcgggacctgggtggcttgaagagcctaatgttgtggaaatagagatgaatcaggtg
gcacagtcattgccgaatacccctccttcgattggtgatgctaagggttcagatggtgac
agccatgatcagggcaatgagcatagtccaaacaattatttgaccaagagagcaatcacc
aaagattctgaagataagattaggcagttggggcatgacggttctgcctccgaaaccgaa
ggtggtcatttgaggagcatcaagaggcaaaagaaatttgactatggcacatcagagttg
agcatgaaagcagacggttgtattccaccacttgtttcactttctgaaatcttaccaact
cccagttctgaatttgaggtcgcatctagggtgccttgtgctgctgcacagcagcctgta
atatcagatgcctcatttgtgcataaaagcatttgtgccttttgccagtcccctgagatt
tcagagcatactggcccaatgttgcattatgctaatgggaaaatggtagtaggagatgag
gccacactttcaaatgtcatacatgttcacagactttgcgttgattgggcaccacaagta
tattttgataatgaaactattaagaatttgaaggcggaagtggcaaggggtgcaaagctc
aagtgcagcagatgtggacaaaagggagctgcccttggctgttatgcaaaatcctgccgg
agaagttatcaccttccctgtgcaggacaagtatcaaattgtcgctgggaccatgaaaag
tttcttatgctctgtcctactcattcttctttcaagtttccaaatgagaggtccagaggc
cctcagcagtccaaactttgggcagctccaaagagagccaaaaaatgggttatatgtgga
tctgctctatcttctaaagagaaggttcttgtgatcgagtttgcaagcatgtgtggtgca
actgtgaccaagtactgggaaccaaatgtcacgcatgttattgcagccacggatgcacaa
ggtgcatgcaccaggacgctgaaagttcttatggccattttgaatgggagatgggttctt
aacattgattggataaaagcttgcatggaagctatgcatcctgtggacgaagtaccctat
gaagtttgtcttgacaaccatgggtgttctgatggccccaaaactggcaggcttatggct
tcaaataatgcaccaaagctcttcgatgggttcaaattctatttttctggtgattttgtc
cccgaatacaaggacgatctccaaaccttggttgtaactgctggaggtactgttttgaaa
agtaaagaagaattgccatcacaaagctgtgaagaggaagctctggtgagggtgctaatt
gtctacaaccttgattccccacaaggctgcaaggtaggagaagaagttgatattctttgg
aatagattgagtgaagcgcaggatgtagcctcagatattggatcccaagttattggtcac
acttggcttgtggaatcaattgctgcatgtaaattgcagcctcttgtcagctga
DBGET
integrated database retrieval system
