Caretta caretta (Loggerhead turtle): 125644657
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Entry
125644657 CDS
T09292
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125644657 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125644657 (BARD1)
04121 Ubiquitin system [BR:
ccay04121
]
125644657 (BARD1)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125644657 (BARD1)
03400 DNA repair and recombination proteins [BR:
ccay03400
]
125644657 (BARD1)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
125644657 (BARD1)
Ubiquitin system [BR:
ccay04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
125644657 (BARD1)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
125644657 (BARD1)
DNA repair and recombination proteins [BR:
ccay03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
125644657 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_2
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4_2
zf-C3HC4
NIBRIN_BRCT_II
zf-C3HC4_4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
125644657
NCBI-ProteinID:
XP_048724869
EnsemblRapid:
ENSCECG00000010060
LinkDB
All DBs
Position
11:10421117..10486967
Genome browser
AA seq
802 aa
AA seq
DB search
MRAALRARSGNQPAPAGRPAPAPRGMERPAGSWDGTRAALRQLEGRLRCSRCMNILKEPV
CLGKCEHVFCLACVGDCIGTECPVCHTPAWVQDVQINRQLDNMIQLCSKLRHLLGKDFTD
SAEDLFTSVGPDHETRSKKRQIKMWFSPRSRKIRCVLNSSSLQKQNQLVTNGGSIHQGPS
STFDFLPSPPQEKPSKMTKEPPPHRSKKKLKKKSLAHINQVWGIEKEKQKEGSGTEGETQ
DEFKEKTVTFCSQPLVLCSPEPNNMEETVGQESVMETDRKDGSVSHLEMATHVKPTEDKD
SSAQVNTMNTEKPLPSENEITPLKRRRQQSISSTVCHSKRLRRSDQSADTHSVNQGVCNP
AVTAMSTIKISPTIKHGTPVHISSPAFKLTGGTVSKTRSSAIFQEINSPSLSKTPSTPFT
SNTHNQMETTHSPSLLKKSPSNNTTTKRNHRGETLLHVASIKGDVSAVEHLLKNGADPNV
KDHAGWTPLHEACNHGHRKVVELLLQHRALVNTTGYQNDSPLHDAAKNGHMSIVELLLSH
GASQDAVNIFGLRPVDYAETEKMKSVLMLPMKNESYSFSQCGEQASPGHPREGPVVLLGS
SLNSEQQKSLSKLAAVLKARKCVEFNSTVTHVIIADDPMRSTIKGMLAILAGCWVLKFEW
VKACLQSRIREREEKYEICGGPRRGRLNQDQLLPKLFDGCYFYFWGTFNHHQKNDLIELV
KAAGGQILIRQPKPDSDVTQTINTVAYHAEPGSDQSFCTQYVIYDVSSKYNPDKIRQGKV
WMAPSSWLIDCVMSFQLLPVTK
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgcgggctgcgctgcgggctcgatccggcaaccagccggctccggcagggaggcccgcg
cccgcgccgcgcggcatggagcggcccgccggcagctgggacggcacccgggccgccctg
cggcagctggaggggcggctgcgctgctcccgctgcatgaacatccttaaggaacctgtg
tgcttgggaaaatgtgagcatgtcttctgtctagcttgtgtgggggactgtattggcaca
gaatgcccagtgtgtcacactccagcctgggtacaagatgtgcaaataaataggcagcta
gacaacatgatccagctgtgcagcaaactgcgtcatctactgggcaaggacttcacagat
tctgcagaagacttgttcacatcagtaggtcctgatcatgaaacaagaagtaagaagagg
cagataaaaatgtggttcagcccacgcagtaggaagatcaggtgtgtgctaaacagcagt
tcccttcagaagcagaatcagctggtgactaatggtggcagcattcaccagggcccatct
tctacttttgacttccttccttctcctcctcaagagaagccttccaagatgaccaaggaa
ccaccaccacacagatcgaagaaaaagctgaagaaaaagagtctagcgcacatcaaccaa
gtatggggtatagagaaggaaaagcagaaagagggcagtggaactgaaggggagacccaa
gatgaatttaaagagaagactgtgaccttttgcagccagccattagttttatgcagtccc
gaaccaaataatatggaagagacagtaggacaggagtctgtaatggaaaccgaccgtaag
gatggaagtgtgtcccacttggaaatggccacacatgtaaaacccacagaggataaagat
agctctgcacaagttaacacaatgaatacagagaaacctctgccatcagaaaatgaaatt
actcctttaaagcgcagaaggcagcagtccatatcttccactgtttgtcattctaaaaga
ctgagaagaagtgaccagagtgctgatacgcactcagtcaaccaaggtgtttgcaatcct
gcggtaactgccatgagcactattaaaatctctccaactattaaacatggaactccagtt
catatctcctctcctgcatttaaacttactggtggcactgtatcaaagacaagaagctct
gcaatttttcaagaaataaatagcccttcactttcaaaaactccctctaccccattcact
tcaaatactcataatcaaatggaaaccacacacagtccttccctcttgaagaagtctcct
agtaataacacaactaccaaaaggaatcacagaggagagaccttgctccatgttgcttca
atcaagggtgatgtatcagccgttgaacacttactgaaaaatggagcagaccccaatgtt
aaagaccatgctggatggacaccattgcatgaggcttgtaatcacgggcacaggaaggtg
gtggagctattactacagcaccgggcattggtgaacactactgggtatcagaatgactca
ccgcttcatgatgctgccaagaatgggcatatgagcattgttgagctgttgctctcacat
ggagcctcccaggatgcagttaatatattcggtctgcgccctgtggactacgcagaaact
gaaaagatgaagtctgtgctaatgctaccaatgaagaatgaatcatattcatttagtcaa
tgcggggaacaagcaagcccaggccaccctagagaagggcctgttgttttactgggaagc
agcctcaattcagagcaacaaaaatcactgagcaaacttgcagcagtgctgaaggctaga
aaatgtgtggagtttaacagcacagtgactcacgtcattatcgctgatgatccaatgcga
agtactatcaaaggtatgctggccattctggctggatgttgggtcctgaaatttgagtgg
gtgaaggcatgtttgcaaagcagaattcgtgaacgagaggagaagtatgaaatctgtggt
ggcccacgaagaggcagactcaaccaagaccagctgctgcctaagttgtttgatggttgc
tacttctatttttggggaactttcaaccaccaccagaagaatgatctcatagagctggtt
aaagcagcaggaggacaaatcctcattaggcagccaaagccagatagcgacgtgacacag
accatcaacacagtggcataccatgccgaacctggttctgaccagagtttctgcacacaa
tacgttatctatgatgtgtcttctaaatacaacccagataaaattcgccaaggcaaagtc
tggatggccccttccagctggcttatagattgtgtgatgtcatttcagctgttacctgtt
acaaagtga
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