Coregonus clupeaformis (lake whitefish): 121554993
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Entry
121554993 CDS
T08357
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121554993 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121554993 (bard1)
04121 Ubiquitin system [BR:
cclu04121
]
121554993 (bard1)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121554993 (bard1)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121554993 (bard1)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
121554993 (bard1)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
121554993 (bard1)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
121554993 (bard1)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
121554993 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
121554993
NCBI-ProteinID:
XP_041724671
LinkDB
All DBs
Position
40:complement(15480110..15518910)
Genome browser
AA seq
824 aa
AA seq
DB search
MDPDICTDEGWTKTKEAVAHFRKLLLCSKCSKLMNEPVCLGVCEHMLCRSCAGPQAGVGC
VVCHSPAWVKDIQINRQLSNITELFGNLDSLLNPTDSDYSDALPISPPAQSDKSVLKHKK
NFKIWFSPRSRKVRCRVEKPAVVPLPEVGSGTVKAAPRPPATLPESKGKDLSVFNFNSSS
QDSGSSSPQRVTNNEKKKKATKKTRNCGGGGVRKPAAGGWQKPTTHKETKQNIKTQRLEA
INQQWGFAGERGDVREEEEQVITEEGERRSSKRVSFQSPATLPATVEPQKEDLRQGDTII
LSPSRSILKVVQPGENVPLSEDQDGPSPHTTPSQLDKLSAKQHSKPKEETTTKPDLPSPP
KRTPKRSCVEEKNVSQSTPKKPKASPGQYRRPAVDRVALPALHTPPSPSLAASPRHGCTP
TSTRRSRGGEQQRGCSPCSPAPLGKRSPGRLSQNSPAVVKRNHKGETALHLAAIKGDVKT
VKELLDQGADPNLKDNAGWTPLHEACNLGHQGVVEVLVERGGVLLNTPGYENDSPLHDAV
RNGHTGIAMLLLQHGASQSVLNMFGLRPVDYAVSPEMQAILRAASEGPHPVNSPLSLPPS
LNKASEGVRREEQVVVLGSKLSQSQQTRLAKLGQLLGGKRADAFSCSVTHVVVSDGPMPA
TLSTLLGLLNGCWVLNFSWVEACLQADSWIAESDHEAGEGPQRSRINRNSLLPPLLDGCF
FYLMGSFRKPPRDELLQLVREAGGQVLTRQPKPDSDVTQTLSAAAYHASPGSDQALCTQY
IIYDPQGSYRPPRVRLGKVWSAPSTWVVNCISAFQLLPVPELES
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgatatttgcactgacgaaggctggacaaaaacgaaggaggctgtcgcgcat
tttcgaaaacttctgctgtgctcaaaatgttcaaaactgatgaacgaacccgtgtgcctc
ggagtttgtgaacatatgctttgcaggtcgtgtgctggtcctcaagctggagtggggtgt
gtggtgtgtcacagtcctgcctgggtgaaagacatccagatcaacagacagctcagcaat
atcacagaactctttggcaacctagactcactactcaatcccactgactccgattactca
gatgcccttcccatttcaccaccagcgcagtcagataaatctgtcttaaagcacaagaag
aacttcaagatctggtttagtccccgcagccgtaaggtgcgctgccgagtagagaagcct
gcggtagtgcctctaccggaggttgggagtgggactgtgaaagctgctccaagacctcct
gcgacactacctgagtctaaaggcaaagacctgtctgtcttcaacttcaactcctcctcc
caagactctggttcctcctctcctcaaagggtgactaacaatgaaaagaagaagaaagcg
actaagaagacgagaaattgtggtggtggtggtgtcaggaagcctgcagccgggggttgg
cagaaaccaaccacgcataaagaaaccaagcagaatatcaagacacagaggctggaggcg
atcaaccagcagtggggctttgctggagagaggggagatgtcagagaggaagaagagcag
gtcattacagaggaaggagagcgcaggtctagtaaaagagtttccttccaaagcccagcc
accctgcctgccactgtggagccccagaaggaggatctccgtcagggggacaccatcatc
ctcagccccagcagaagcatcctgaaggtggttcagccaggagagaacgtcccactctct
gaggaccaggacggtccaagcccacacaccaccccttctcagctggataagctatctgcc
aagcagcactccaaaccaaaggaagaaacgactacaaagcctgacctgccctcccctcct
aagcgcactcccaaaagatcctgtgtggaagagaaaaacgtctcacagagtaccccaaag
aaacccaaggcatctcccggccagtatagacgtccggcagtggacagggttgcactccca
gccctgcatacccctccctcgccctcccttgctgccagccccagacatggttgcaccccc
accagcaccaggagatccagaggaggagagcagcagcggggctgcagcccatgttcccca
gcccccctggggaagaggtccccaggcagactgtcacagaacagcccagcggtggtgaag
agaaaccacaagggagagacagccctacacctggcagcaataaagggtgatgtgaagaca
gtgaaggagctcctagaccagggggctgaccccaacctgaaagacaatgctggatggaca
ccgctgcacgaggcatgtaacctgggccaccagggtgtagtggaggtcttggtggagagg
ggaggggtgctgttgaacacaccaggctatgagaacgattctcctctacacgacgctgtc
aggaacggacatactggcatcgccatgcttctgctgcagcacggggcttcacagagcgtc
ttgaatatgtttggccttcgccctgtggactacgccgtgagcccagagatgcaggcaatc
cttcgggcggcctctgaaggaccccacccagtcaactcacctctcagtcttccacccagc
ctcaataaggccagtgaaggtgtgagacgggaggaacaggtagttgtactgggcagtaaa
ctgtcccagtcccaacagacccggctggccaaactgggacaactactgggaggaaagagg
gcagacgccttctcctgctcagtcacccatgtggtggtgtcagacgggccgatgcccgcc
actctgtccactctcctgggtctcctgaacggctgctgggtcctcaactttagctgggta
gaggcgtgcctgcaggcagatagctggattgccgagagtgaccatgaagcaggagaagga
ccacaacgcagccgcattaacagaaacagcctgctgcccccactgttggacggttgtttc
ttctacctcatgggctccttcaggaagccccccagggacgagctcctccagctggtgaga
gaggcagggggccaggtcctgacccgacagcccaaaccagacagtgatgtgacccagacc
ctgtctgctgcagcctaccacgcctctccgggctcagaccaggccctgtgtacccagtac
atcatctatgatccccagggctcttacaggccccctagggtgaggttaggaaaggtgtgg
tcagctccatctacatgggttgtaaactgtatatcggccttccagctactgccagtgcct
gagcttgaatcatag
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