Coregonus clupeaformis (lake whitefish): 121573262
Help
Entry
121573262 CDS
T08357
Name
(RefSeq) DNA polymerase beta-like
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121573262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121573262
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121573262
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
121573262
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
121573262
BRITE hierarchy
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
HHH_5
Cactin_mid
HHH_2
DUF4806
Cdd1
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
121573262
NCBI-ProteinID:
XP_041741058
LinkDB
All DBs
Position
18:54022294..54030932
Genome browser
AA seq
336 aa
AA seq
DB search
MSKRKAPQESPNEGITDFLTELANYERNVNRAIHKYNVYRKAASVISKYPQKIKNGEEAK
KLEGVGKEIAKKIDEFLQTGTLKKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVK
TLEDLKKIEHKLNHHQQIGLKYFEEFEKRIPRAEMTKMETFILQELELLDTEYIGTICGS
YRRGAESSGDIDILLTHPNYTSVDEKQPKLLHAVVEHFESIGFITDTLSKGDTKFMGVCQ
LQQNDEDGEEYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIR
PVGVTGMAGEPLMVDSEKDIFDYIQWKYKEPKERSE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaggaaagcgccacaggaatccccaaacgagggaataacagactttcttaca
gaattggccaactatgagaggaatgtcaacagagctatccacaagtacaacgtctacagg
aaagccgcttcagtgatctccaagtacccccagaagatcaaaaatggggaggaggccaag
aaactggagggagttggaaaagagatcgctaagaagatagatgagtttttacaaacagga
acactcaagaagttggaaaagattcgtaatgatgacaccagctcatccatcaacttcctt
accagagttactggtattggtccggctgctgccagaaagttttttgatgagggagtgaag
accctggaagatctgaagaaaattgaacacaagctcaatcatcatcagcagattggactc
aagtactttgaggagtttgagaagaggattccacgagctgagatgacgaagatggagacc
ttcattctgcaggagctggagttgctggatactgagtacatcgggaccatctgtggaagc
tacaggagaggtgctgaatccagtggggatattgatatcttgttgacccacccaaactac
acctctgtggatgagaaacagcccaaacttctccatgccgtggtggaacattttgagtcc
attgggttcattacagacacactgtccaaaggagacaccaaattcatgggagtctgccag
ctgcagcaaaatgatgaagacggggaggaatatcttcacaggcgcattgatatcaggtta
attcctaaggaccagtattactgtggtgtgctgtatttcactggcagtgacatcttcaat
aagaacatgagaactcacgctctggagaaaggcttcactctcaacgagtacaccatccgg
ccagtgggggtcactggtatggccggagagcctctgatggtggacagtgagaaggacatc
tttgactacatccagtggaaatacaaagagcccaaagagcgcagcgagtga
DBGET
integrated database retrieval system