Coregonus clupeaformis (lake whitefish): 121587380
Help
Entry
121587380 CDS
T08357
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121587380 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121587380 (hdac6)
04131 Membrane trafficking [BR:
cclu04131
]
121587380 (hdac6)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121587380 (hdac6)
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
121587380 (hdac6)
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121587380 (hdac6)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121587380 (hdac6)
Membrane trafficking [BR:
cclu04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121587380 (hdac6)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
121587380 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
121587380
NCBI-ProteinID:
XP_045062927
LinkDB
All DBs
Position
24:complement(5530515..5574122)
Genome browser
AA seq
1141 aa
AA seq
DB search
MDSVPEPRSVRRSHRTSKSPDNNAAKESGKTRKMTSNLQETRRRGRMDRCKGEEDIANQL
QNLDLGNKASATGTGLVFNKIFTHHRCLWDPSHPECPERVSTIMDMVEKQGLLSRCVMVE
ARAASNQELRLVHTKEYVDLMRSTQQMDEDQLKTLADTYDSIYIHPESYTCASLAVGSVL
QLVDKVMTSELRNGFSVSRPPGHHAQVDKMNGYCMFNHLAIAARYAQTHHRVERVLIVDW
DVHHGQGIQYVFQEDPSVLYFSVHRYEEGSFWPHLPESDSSAVGTGSGEGYNINLPWNKI
GMKDADYVAAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMSASPQCFSVLTHMLRG
LAQGKLLLVLEGGYNLQSTAEGACACLRSLLGESCPRLGSPSIPHDSALKSISRSISALY
PYWTSLQVLEGGPLSDSDPLTPALTPALTPALTPALTPALTPALTPALTPAESSEGLSEE
VCEERTGSLDLTTGLVYDQRMMDHHNMWDSHHPELPQRIQRVFSRHEDLGLVSRCLRIPA
RLALEEELALCHSLEHVAKMKATESMKPRDLHRLGDEYNSIFISTESYRSARLAAGACFN
TVQAVLTGQVRNGVAIVRPPGHHAEKDAACGFCFFNTAALTARYAQSISQQPLRVLILDW
DVHHGNGTQHIFEEDDSVLYMSLHRYEDGTFFPTSEDAHYNRVGKGKGAGFNVNIPWNGA
KMGDAEYLAAFHSVVMPIAREFDPGLVLVSAGFDAARGDPLGGYQVTPPGYAHLTHLLMG
LAGGRVLVILEGGYNLTAISESMSACTSILLGDPPLSLPPLPPPHPNAAVSINNVIRTHA
TYWRSLRIQLPESLRLSLPSPKPRGKRTSKGKKSPRQGNQGGTGQGNQGGTSPGQESPQT
APLPSGGRGDHDLDDLTKGLVSLDLNRSTSANPSPASVPLGGARSKVRLSPPKNPVMELK
TEAVPSTPEILQPTPDKTETQAVAMASTGPVTKGNQESGAAAVEEGASGYSKEPVFELFC
GDQDVDGSTMYVVDPLSWCPHLDSVKPVPAGGIDVFRPCEDCGTDAENWICLCCYKVYCG
RYVNQHMITHGLVSDHPVVLSFADLSVWCYPCQAYVHNQVVFEAKNAAHCVKFGEDMPLS
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtgccagagcccaggtcagtcagacgttcccatcgcacgtcaaagtcaccg
gacaacaacgcagccaaagagagcggcaagacacgcaagatgacaagcaacctgcaggag
actcggaggagaggaagaatggacagatgtaaaggagaagaggacatagccaatcaactg
cagaacctggatctgggcaacaaggcttctgccacagggactggtctggtgttcaacaaa
atattcacccaccatcgctgtctctgggaccccagccatccagaatgcccagagagagtg
agcaccataatggatatggtggagaaacagggactgctgtctcgctgtgttatggtggag
gctagggctgcgtctaaccaagagctgcggttagttcacacgaaggagtatgtagatctg
atgaggtccactcagcagatggatgaagaccagctgaagacgctggctgacacctatgac
tccatctacatccaccctgagtcctatacgtgtgccagtctggctgtgggctctgttctg
cagctggttgataaggtcatgacctcagagctccggaatggattctctgtttccagacct
ccaggccatcacgcccaggtagacaagatgaatggttactgtatgttcaatcacctggcc
atcgcagcgcgctacgcacagacacaccatcgggtggaacgagttctgatagtggactgg
gatgtgcatcacggccaggggatccagtacgttttccaggaggatcccagtgttctgtac
ttctcagtccacagatatgaggagggttcgttctggccccacctgcctgagtcagacagc
agtgctgtgggcaccgggtctggagagggatacaacatcaacctgccctggaataagatt
ggaatgaaagatgcagactacgttgcagcattccaacagcttcttctgcctgtagcctat
gagttccagcctcaacttgtcctggtggcagcaggctttgactctgtgataggtgatccc
aagggggagatgtctgccagtcctcagtgtttctctgtgctaactcacatgctgcggggc
ctggctcaggggaagttgttgctggttctggagggaggatataacctgcagtccacagca
gagggggcatgtgcctgtctgaggtcactgctgggggagtcctgcccccgcctggggtca
ccgtccatccctcatgacagtgccctgaaatccatctccaggtccatctctgctctgtac
ccttactggaccagtctgcaggtactagagggagggcctctatcagacagcgaccccctg
accccagccctgaccccagccctgaccccagccctgaccccagccctgaccccagccctg
accccagccctgaccccagccctgaccccagcagagagcagtgaggggcttagtgaagag
gtctgtgaggagagaacaggcagcctggacctgaccacaggcctggtgtacgaccaaagg
atgatggatcatcacaacatgtgggacagccaccatccagagcttccccagaggatccag
cgtgtcttctcccgtcatgaggacctgggcttggtgtcccgttgcctaaggataccggct
cgactcgccttagaagaggagctggctctgtgccacagtttggagcacgtagccaagatg
aaggctacagagagcatgaagccgagagaccttcacagactgggagatgagtacaactct
atcttcatcagcaccgagagctataggagcgcccggctggctgctggggcctgcttcaat
acagtacaggctgttctgacgggacaggtccgtaatggcgtggccattgtgcgcccccct
ggtcaccatgcagagaaggacgctgcctgtgggttctgtttcttcaacactgctgccctg
actgcccgatacgcccagtccatctcccagcagcccctgcgggtcctcatcctggactgg
gatgttcaccatggcaacggaacacagcacatcttcgaagaggatgacagtgtcctctac
atgtccctgcatcgctacgaggatgggacattcttccctacttcagaggatgcgcactac
aacagagtgggcaaggggaagggagcagggttcaatgtcaacatcccctggaacggagcc
aagatgggcgacgcagagtacctggccgccttccactcagtggtcatgcccattgctaga
gagtttgacccaggcctggtgctggtgtcggcagggtttgatgcagccagaggagaccct
ctgggagggtaccaggtgacccccccgggctatgcccacctcacccacctcctgatggga
ctcgcaggcggcagagtactggtcatcctggagggaggttataacctgaccgccatctct
gagtctatgtctgcctgcaccagtattctcctgggagacccccctctgtccctgcctccc
ttgcccccacctcaccccaacgcagcagtcagcatcaacaatgtcatacgcacccacgcc
acctactggcggtccctcaggatacagcttccagagtctctccgcctgtctctgccttct
cccaaacccagagggaagaggacctctaagggcaagaagtctcccagacagggtaaccag
ggcgggaccggacagggtaaccagggcgggaccagcccgggtcaggagtcacctcagaca
gcacctctgccctctggtggtcggggcgaccatgaccttgatgacctcacaaagggactg
gtgtcactcgacctaaaccgaagtacctcagccaatcccagcccagcgtctgtcccattg
ggaggggccagatcgaaggtgaggctcagtcctccgaagaaccccgttatggagttgaag
acggaagctgttccaagtacaccggagattctccaacctacacctgacaagacagagaca
caggcggtcgccatggcttccacaggcccagttaccaagggaaaccaggagagcggtgct
gcggcggtggaggaaggggcgtctggttactccaaggagccggtgtttgagctgttctgt
ggagaccaggacgtggatgggagcactatgtacgtggtggatcccctgtcctggtgccct
cacctagactcagtgaagcctgttccggctggagggatagatgtgttccggccctgtgag
gactgtgggaccgacgctgagaactggatctgtctctgctgttacaaggtgtactgtggt
cgctatgtcaaccagcacatgataacccacggcttggtgtcggatcaccctgtggtgctg
agctttgctgacctgtcggtctggtgctacccctgccaggcctacgtccacaaccaggtg
gtgtttgaagccaagaacgctgctcactgtgtgaagtttggagaggacatgcccctctct
aactaa
DBGET
integrated database retrieval system
