KEGG T02983: 102622461

Citrus sinensis (Valencia orange): 102622461

Entry

102622461         CDS       T02983

Name

(RefSeq) BRCA1-associated RING domain protein 1 isoform X2

K10683

BRCA1-associated RING domain protein 1

Organism

cit Citrus sinensis (Valencia orange)

Pathway

cit03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:cit00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    102622461
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102622461
   04121 Ubiquitin system [BR:cit04121]
    102622461
   03036 Chromosome and associated proteins [BR:cit03036]
    102622461
   03400 DNA repair and recombination proteins [BR:cit03400]
    102622461
Messenger RNA biogenesis [BR:cit03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     102622461
Ubiquitin system [BR:cit04121]
Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    102622461
Chromosome and associated proteins [BR:cit03036]
Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     102622461
DNA repair and recombination proteins [BR:cit03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     102622461

SSDB

Motif

Pfam:

zf-HC5HC2H BRCT BRCT_2 zf-C3HC4_2 zf-RING_UBOX zf-C3HC4 zf-RING_5 zf-HC5HC2H_2 zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-RING_10 zf-RING_6 RTT107_BRCT_5 ROH1-like

Other DBs

NCBI-GeneID:

102622461

NCBI-ProteinID:

XP_006479473

LinkDB

Position

3:complement(join(42459589..42459933,42460166..42460284,42460714..42460879,42461178..42461268,42461503..42461603,42461738..42461924,42462144..42462244,42462313..42462648,42462847..42463175,42463274..42463369,42463589..42463659,42463766..42463819,42464133..42464224))

AA seq 695 aa
MADSAANSKRSFNPLVLHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCVPRSAQCDS
ECPLCKSQCTYADLRPLAFLENIIAIYKGLDALPSSNLLQPVYSAFGRRQEDNSSSGQSL
SANTLVQVSFNNPACDGQKSKGFELTGMGENKRDGGQNPNSAQPSSHTQAGGIRDCRPAQ
IDINQLDQLSPCSPPSFGDIKGSDNESNDQGGELSPESHLANRSVKRGFDDRTRQEHRLS
SSETAGSFRDSKRLKSFNYGPDSVGVKSSGHSESTVFRSESLMASRSDSELKSVAALASE
KMPPISNDSCANNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEW
APQVYYAGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRW
DTENFLVLCPVHSSVKFPIEKSGHRSIRNRAAPLQLTPQEPSFWGSSPNKAKEWVFCGSA
LSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKI
DWIKACMEAMNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLG
YKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLDFPEGSLIGEVSTIWNR
LNEAEELASKIGCRVIGHTWLLESIAAHKLQPFLS

NT seq 2088 nt +upstreamnt +downstreamnt
atggccgattccgctgccaatagtaaacgatcttttaatccgttggttcttcatcttcag
aaacttgctctcgagctcaaatgtcctctctgcttaaacttgttcagtaggccgttgttg
ctcccatgtgatcacatattttgcaattcatgcgtacccagatctgcacagtgtgattca
gagtgtcctttatgtaaatctcagtgtacttatgcagatttaaggcctttggcttttcta
gaaaacataattgcaatttataaaggattggatgctttgcctagttccaacttgcttcag
cctgtttattcagcttttggtagacgtcaagaggataattcaagcagtggccagtcttta
tcggccaatacattagttcaagtttcatttaataatcctgcctgtgatggccaaaaaagc
aaaggatttgaactaactggtatgggagaaaataaacgtgatggtggccagaatcccaat
tcggcacaaccaagttcccatacacaagctggaggcattcgagactgcaggcctgcccaa
atagacataaaccaattggaccaattgtcaccttgcagtcctccttcatttggtgatatt
aagggttcagacaatgaaagcaatgatcagggtggggagcttagtccagaaagtcatcta
gccaatcgatctgtcaagagaggttttgatgatagaacaagacaggaacatagactttct
agctctgagacagcaggttctttcagggactcaaagagactgaaaagtttcaactatggg
cctgatagtgttggtgtgaaaagttctggtcatagcgaatcaacagtttttcgaagtgaa
agcttaatggcttctagatctgattcggaacttaaatctgtggcagctcttgctagtgaa
aaaatgcctccaatttcaaatgactcttgtgcaaataattatatatgtgggttttgccag
tcctctagaatttcagaggtaactggattgatgttgcactatgctaatgggaaaccggtg
gtgggagaggaggcagatcgttcacatgttatacatgtgcatagtaaatgcattgaatgg
gcaccgcaagtatattatgctggagacactgttaagaatctaaaagcagaattggcaagg
ggttcaaaacttaagtgtagcagatgtgggctaaagggagcagccctaggttgttatgtg
aggtcttgccggagaagttatcatgttccttgtgctctggaaatttcggaatgtcggtgg
gacactgaaaactttcttgtactttgtccagtgcattcttcagtcaaatttccaattgag
aagtctggacatcgcagcataagaaatcgtgctgcaccactccaattaactccccaggag
cctagcttttggggatcttcacctaataaagcaaaagaatgggttttttgtggatctgct
ttgtctgtggaggagaagcttcttttggtcaggttcggtaacatgattggtgtaccagtg
agcaagttctggaaaccaaatgtcactcatgtgattgcggctacagatgcaaagggttcg
tgcaccaggacactgaaagttctcatggccattttgaatgggaattgggttcttaagatt
gactggataaaagcatgcatggaggctatgaatcctgtgggtgaagagccttatgaaatt
aatcttgacaaccatggatgtgaagagggcccaaaaactggcagacttagggcattgaat
aaagcaccaaaactctttgatggtttaagtttttatttcagtggtaacttcatgttgggt
tacaaggaagatctacagagtctggttattactgcagggggtaccatttggaagagtgag
ggtgaattattggcacaatgtcgcaatgacgaaacagctccttctaaggtattagtagtt
tataatcttgacttcccagaaggatctttgattggagaagtttcaactatttggaataga
ttaaatgaagcagaggaattggctagcaaaattggatgccgagtcattggtcacacttgg
cttttggaatcaattgctgcacataagctacaaccttttctcagctga

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