KEGG T02983: 102626843

Citrus sinensis (Valencia orange): 102626843

Entry

102626843         CDS       T02983

Name

(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1

K10683

BRCA1-associated RING domain protein 1

Organism

cit Citrus sinensis (Valencia orange)

Pathway

cit03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:cit00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    102626843
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102626843
   04121 Ubiquitin system [BR:cit04121]
    102626843
   03036 Chromosome and associated proteins [BR:cit03036]
    102626843
   03400 DNA repair and recombination proteins [BR:cit03400]
    102626843
Messenger RNA biogenesis [BR:cit03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     102626843
Ubiquitin system [BR:cit04121]
Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    102626843
Chromosome and associated proteins [BR:cit03036]
Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     102626843
DNA repair and recombination proteins [BR:cit03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     102626843

SSDB

Motif

Pfam:

BRCT zf-C3HC4_2 zf-HC5HC2H BRCT_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-RING_6 zf-C3HC4_4 zf-HC5HC2H_2 zf-RING_5 RTT107_BRCT_5 zf-RING_10 zf-rbx1 zf-Nse

Other DBs

NCBI-GeneID:

102626843

NCBI-ProteinID:

XP_006468072

LinkDB

Position

2:join(28351685..28351743,28351834..28351887,28351990..28352060,28352434..28352547,28352920..28353398,28353642..28353752,28353838..28354875,28355021..28355121,28355474..28355660,28355768..28355862,28355981..28356098,28356176..28356341,28356555..28356673,28356989..28357339)

AA seq 1020 aa
MGDQRSHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYRR
REIRAAPHMDNLVSVYKSMEVASGINIFVTQDESSTKSSDKEKWVQGDLICGEQVTGGCQ
DKVEHQGTSKGKRFRRTSKATVEPSGTVCTKPSCPTKKRVQVAQYPLPETPTQPAKLEGG
TVKNTTGELKSSSVVIRENPVINKEGTVLSPFFWLRDEEDREKSSQHTETDAYITPPDVP
SFSDLKHSEDISSSELSPTAEVHGKSDGLDFFESEIFEWTQRACSPELLPSPAKTQVADA
EENGKGLEAALQGSNTVVDISNGNATCVIFEQGNGNENEGRCKALCPRNTNPNNMIENGK
LNKKGRKANSTAQKKYAKRDTNKGSTTPATSNEESENFVQKQTSISNAKFSQKSSNRRGT
CAAEPIPDNVLAASVRTEIVDQHGKNIGSDLPTSLGKKQGSDEDLHFMKTRKKCWKINSQ
TEEDFCTKSKRRKVDSTEVNVLENVSVVQKKTYKDTVPQPSLIPTFEDADKKESLLKGKT
TKTAKKTKTSSNLKCDKELQWNKRMKASFSGISKDGLVGESKVQEGCSSTANETQSPEGV
RGSSDIGVLEKLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADY
NGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCR
KSFHVPCAKLILQCRWDTDNFVMLCPLHTSSNLPNENPGSQESRKKCISKKLLTQHNKVA
FKSDISTNSRQSWENKLVLCCSALTVGEQEIVSEFERISKVKLLKKWDSCVTHIIASTDE
NGACKRTIKYLMGILEGKWILNVNWVKACMKAMKPVDEEQFEIIVDVHGMRNGPRLGRLR
VLNKQQKLFHGLKFYPMGGFESSYRGYLQELIVAAGGTILHRKPISSDQGALLSGSSTCL
TFIIYSLELPDKCDLSKKDMILTSRRNEAEGLASSTGAKAVSNSWVLNSIAACKLQSFAE

NT seq 3063 nt +upstreamnt +downstreamnt
atgggggatcagagaagtcacctggagaaaatgggcagagaactcaagtgtcctatttgc
ttgagtttgctgagttctgctgtttcgcttacgtgcaatcatgtattctgcaatgcgtgc
attgtcaaatcgatgaaatcgggttctaattgtccggtttgtaaagtgccctatcgccga
agagagattcgcgctgctcctcacatggacaacttggtcagtgtttacaaaagcatggaa
gttgcttctggaattaatatatttgttactcaggatgaatcatcaactaagtcatcagat
aaagaaaagtgggttcaaggcgatcttatttgtggtgaacaagttactggagggtgtcag
gacaaagtagagcatcaaggaacatcaaaaggcaaaaggttcaggagaacaagtaaagcc
actgtggaaccctctggaactgtttgcacgaaaccttcctgcccaaccaagaaaagagtt
caggtggcacagtatcctcttccagaaaccccaacacagcctgcaaagttggaaggtggc
actgttaaaaacaccaccggtgagttaaagagtagctcagttgttataagggagaatcct
gttataaacaaagaaggtacagtgctttcacctttcttttggttgagggatgaagaagac
agagagaaatcaagtcagcatacagagacagatgcatatataacacccccagatgttcct
tctttcagtgatctgaagcactcagaagatataagttcttctgaattgtcccctacagcc
gaagtacatggcaaatctgatggcctggatttctttgaaagtgagatatttgaatggaca
caaagggcttgctctcctgaacttcttccaagtcctgcgaagactcaagtggcagatgct
gaagaaaatggaaagggcctagaagcagctttgcagggttcaaacaccgttgtagatatc
agtaatggaaatgctacttgtgtaatctttgaacaaggaaatggaaatgagaatgagggg
cgctgcaaggcattgtgcccaagaaacacaaatcctaacaatatgattgagaatggtaaa
ctgaacaagaaaggcaggaaggctaatagtactgcccaaaagaagtatgcaaagagagat
acaaataaaggttccacaactcctgcaacttcaaatgaagaatctgaaaactttgtacaa
aagcaaacaagtatcagtaatgctaagttttctcagaagtctagtaacaggaggggcacc
tgtgcagcagagccaatacctgataatgttcttgctgcctctgtaagaactgaaattgta
gatcagcatgggaagaacattggctctgatttgcctacttctctgggtaagaagcaaggc
agtgatgaagaccttcacttcatgaagactagaaaaaagtgctggaagatcaatagccag
actgaggaggatttctgcactaagtcgaagagacgaaaggtggactctactgaagtcaac
gtgcttgaaaacgtttctgtggttcaaaagaaaacatataaagatacagtccctcaacca
tcactgatacctacttttgaggatgctgataagaaagaatctcttctcaagggaaaaaca
accaaaactgctaaaaaaacaaaaacttcttcaaatttaaaatgcgataaagaattgcaa
tggaacaaaagaatgaaagcttcttttagtggaatctcaaaagatgggttggttggggag
agtaaagttcaagagggttgcagcagtactgcaaatgaaacacaatcccctgaaggggtt
agaggtagttctgatatcggagttctggagaagcttcataagacacagagaggagctttg
cgaaaatgtgaaacccttgctcacaaaattcaatgttctttctgtcattcttcagaaaac
tcagaggcttcaggggagatggtccactactataatggcaaacctgtttctgcagattac
aatggtggatccaagatcatacattcacacaggaactgcaccgaatgggcccctaacgtt
tactttgaagatgatactgtaattaatcttgaagctgaattagctagaagtcggagaatt
aaatgttgctgttgtggactcaaaggtgcagcacttgggtgttatgagaagacatgtcgc
aagagctttcatgttccttgtgcaaagttgatcttgcagtgtagatgggacactgataac
tttgtcatgttatgccctcttcatacctcttctaatttgcctaatgagaatccaggatct
caagaaagcagaaagaaatgcatttcaaaaaaattgctcactcaacacaataaagttgct
tttaaaagtgacatcagtacaaatagccggcagtcatgggaaaacaagttggttctctgt
tgctcagctcttacagttggagagcaggaaattgtttctgaattcgagagaatatctaaa
gttaaactgttaaagaaatgggattcatgtgtcacccatatcatcgcatcaacagatgaa
aatggagcatgcaaaagaaccatcaaatatttgatgggcatcttggaggggaaatggata
ctgaatgttaactgggtgaaggcgtgcatgaaagccatgaaacctgttgatgaggagcaa
tttgaaattattgttgatgtgcatggaatgaggaatggtcctcgattaggaagactgaga
gttctaaataagcaacaaaagctctttcatggtttgaagttctatcccatgggagggttt
gaatcgtcctacagaggatatctacaagaactgatagttgctgctggaggaactattctg
catcggaaacccatttcaagtgatcagggagctctgttgtctggttcatctacatgttta
acctttataatttacagtcttgagctgcctgataagtgtgatctgagcaaaaaggatatg
atcctgaccagcaggcggaatgaagcagaaggtttggcgagttcaactggggccaaagca
gtaagtaattcctgggttttgaactccattgcagcctgcaaattgcagagttttgctgaa
taa

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