Contarinia nasturtii (swede midge): 116344515
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Entry
116344515 CDS
T08003
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cns01009
]
116344515
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116344515
04131 Membrane trafficking [BR:
cns04131
]
116344515
03036 Chromosome and associated proteins [BR:
cns03036
]
116344515
Enzymes [BR:
cns01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
116344515
Protein phosphatases and associated proteins [BR:
cns01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116344515
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
116344515
Membrane trafficking [BR:
cns04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
116344515
Chromosome and associated proteins [BR:
cns03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
116344515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
116344515
NCBI-ProteinID:
XP_031628962
LinkDB
All DBs
Position
Unknown
AA seq
1075 aa
AA seq
DB search
MSTSQILTRGATQRAKIQTRAMVNKDIQSQQAKTMPSNELQATGKKPNITLNEVKKKARS
SASKSTNETVVKDIYQNALSALKTKRGATGLVFDRRMDQHSCLWDKGYPECPERFTRVLE
RCEELQLIERCHAIESRLGTVDEILTQHTQGQYDILKATENETNESKLEELSSHYDAIYI
HPTTFQLSKLAVGSTIELVERILHDEVQNGMAIIRPPGHHAMKAEYNGYCFFNNVAIAAQ
HAIDHCGANQILIVDFDVHHGQGTQRMFYNDPRVLYFSVHRYEHGTFWPNLRESDFDCIG
EDNGTGYNFNVPLNKTGMSNADYLAIWQQILLPVAAEFQPDLVIVSAGYDAAYGCPEGEM
EITPACYAHLVSPLMTLANGRVAVVLEGGYCLDSLAEGAAITLKTLLGDPCPLLEPLNPP
CDSMVESIMNCIYSHRKYWKCLQIHQTYDMNELTSESTNLHVVEQKFIGSGEPVPDRFET
RNCYPVQSTQRLKDISEHLQKLKLSTNLFSAPNKVCYVYDTQMAEHRNLYEEHYERPERI
TKIQETFAEYDLLNRMHRLNTREASTEELLLSHTYTHVKNMRKISMQNKNMQEIGDKYNS
IYFHEATYKCACIAVGSVLQVVENVLNGLYQKGICVVRPPGHHAESSYPHGFCIFNNVAL
AAKHAINKLNLKRVLIVDWDIHHGNGTQRMFEDDEKVLYISLHRYEHGTFFPKSSDGNYT
VVGTGQGEGFNVNIPWNKHKMGDSDYIAAFQRIIMPIAYEFNPELVIVSAGFDAVVGDPI
GHYNVTPEAYGYFTQWLSSLANGKIILCLEGGYNVNSISHAMTMCTKALLGDPLPLLHTT
GKAPSESCIETIQNVCSVHQKYWKSLRFVNKLPSYDVFAEGTIDEMTKQLNAMTVSDDQN
KPSSSKQCQLESEPSTSGASGSGSAGGNTKQTLTEYLRENRDALLNEEMFAVVPLSDCPH
LATLDSNSTPSVFNTKAPCFNCETVIENWVCLLCFKTFCSRYVQEHMLFHHLESEHALAL
SYSDLSVWCFKCENYIDNPILFKYKNLAHRDKFNEDMVWCYNTETIVLDNATTSS
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcacagattttaacaagaggagcaacgcaacgggccaaaattcaaacaaga
gccatggttaacaaagatattcaaagtcaacaagccaaaacaatgccatcgaacgaactt
caagccactgggaaaaagcccaatattacgctcaacgaagtcaagaaaaaggcacgaagt
tccgcatcgaagtcgacaaatgaaaccgtcgtcaaagatatttatcaaaatgctttgagt
gctctaaaaaccaaacgaggtgcaacgggtctggtgtttgacagacggatggaccaacat
tcctgtttgtgggacaaaggctatccagaatgcccggaaagatttactcgtgttttggaa
agatgcgaagaactgcaactgattgaacgttgtcatgcaatcgagtcacgattgggaacg
gttgatgagattctaacgcagcacactcaaggccagtatgacattttgaaagcaaccgaa
aacgaaaccaatgagagcaagcttgaagagctcagttcgcattacgatgccatttatatt
catccgacgacgtttcaattgtcaaaattggctgtggggagcacaatcgagctagtcgaa
cgtatacttcacgacgaagttcaaaatggtatggcaatcattcgaccgcctggtcatcac
gcaatgaaggccgaatacaatggatattgtttcttcaacaatgttgccattgctgcacag
cacgcaattgaccattgtggtgcaaatcaaattctaattgttgacttcgatgtacaccat
ggacaaggaacacaacgaatgttctacaatgatccgcgtgtactgtatttctcggttcat
cgatacgagcacggcacattctggccaaacctacgtgagtcagattttgattgcatcggt
gaagacaacggcaccggatacaatttcaatgtgccgttgaacaaaactggcatgtcgaat
gcagattatttagcgatttggcaacagattctcttgcccgttgcagctgagtttcaaccc
gatctcgtcatcgtttcggcaggttacgatgcagcatacgggtgtccagagggagaaatg
gaaatcacaccggcatgctatgctcatttggtgtcgcctttaatgacattggccaatggt
cgtgtggcagttgtattggaagggggatactgtctcgattcactcgcagaaggagcagca
atcacacttaaaacccttcttggcgatccgtgccccttgctagagccactcaacccaccc
tgcgacagtatggttgagagcataatgaattgcatctatagtcaccgaaaatattggaag
tgtctgcaaatacatcaaacctacgatatgaatgaattgacaagcgaatcgactaatttg
cacgtcgtggaacagaaatttattggttccggtgaacctgtgccagatcggttcgagacg
cgcaactgttaccctgtacagagcacacagcgactgaaagacatttcagagcatttacaa
aagctcaaattaagcacaaatctattttcagcgccaaataaagtgtgctacgtgtatgat
actcaaatggctgagcatcgaaatctgtacgaagagcactacgaacgacccgaacgaata
acaaagattcaggagacattcgccgaatacgatttattgaatcgaatgcatcgattgaac
acacgtgaagcatctaccgaagagttattattgagtcatacatacacacatgtgaaaaat
atgcgcaaaatttccatgcaaaataaaaacatgcaagaaatcggcgacaaatacaattcg
atttatttccatgaagcgacatacaagtgtgcatgcatcgcagtaggttcagtgctgcaa
gtggttgagaacgtattgaatggtctctaccaaaagggcatctgtgtagttagaccacca
ggccatcacgctgaatcatcgtatccgcatggattttgtattttcaacaacgtggcgttg
gccgcaaagcatgcaattaacaaactaaatctcaagagagtattgattgtcgactgggac
attcaccatggcaatggtacacagcgaatgtttgaagacgatgaaaaagtcctgtatata
tcgttgcatcgttacgaacatggaactttctttccaaaatcgagcgatggcaattacaca
gttgtcggaactggtcaaggtgaaggttttaatgtgaatataccgtggaataagcataaa
atgggcgacagtgattacattgcggcgtttcaacgcatcatcatgccgattgcgtacgaa
ttcaatccggagctggtgattgtatcggcaggatttgatgctgttgtgggagacccaatc
ggccattacaatgtcactccagaggcatatggttattttacacaatggctgtcatcgttg
gccaacggtaaaatcattttgtgcttggaaggtggctacaatgtcaattcgatatcgcac
gcaatgacaatgtgtacaaaagcactgttgggagacccattaccattgcttcacaccacc
ggaaaagcgccaagcgaaagttgcattgagaccattcaaaatgtatgctctgtgcatcaa
aaatactggaagtcacttcgttttgtcaacaaactaccatcgtacgatgtatttgctgaa
ggcaccatcgatgaaatgacaaaacaattgaatgcaatgactgtgtcggacgatcaaaac
aaaccgtcaagcagcaaacagtgtcaacttgagtctgaaccatcaacatcaggcgctagt
ggtagtggatcagcaggcggcaatacaaaacaaacgctgaccgagtatttgagagaaaat
agggacgctctactgaacgaagagatgtttgcggtggtaccactgagcgattgtccacat
ttagcaacgttggattcaaattcaacaccaagtgtgttcaatacaaaagcaccgtgtttc
aattgcgaaacagtcatcgaaaattgggtgtgcttgttatgttttaagacattttgcagt
cgatacgttcaggagcacatgttattccatcacctggaaagcgaacatgctcttgcatta
agctactctgacctgagtgtgtggtgtttcaaatgcgaaaactacattgataatccgatc
ctatttaagtacaaaaatctagcgcatcgtgataaattcaacgaagacatggtatggtgc
tacaatacagaaacaattgttttggacaacgccacaacgtcatcctga
DBGET
integrated database retrieval system
