Cucurbita pepo subsp. pepo (vegetable marrow): 111803452
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Entry
111803452 CDS
T05351
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111803452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111803452
04121 Ubiquitin system [BR:
cpep04121
]
111803452
03036 Chromosome and associated proteins [BR:
cpep03036
]
111803452
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111803452
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111803452
Ubiquitin system [BR:
cpep04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
111803452
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
111803452
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
111803452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-RING_2
zf-C3HC4_2
zf-C3HC4
zf-HC5HC2H_2
BRCT_2
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_6
zf-RING_5
zf-rbx1
zf-RING_10
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
111803452
NCBI-ProteinID:
XP_023543621
LinkDB
All DBs
Position
LG10:complement(437160..443441)
Genome browser
AA seq
1111 aa
AA seq
DB search
MGDPSHLEKMGIELKCPICLSLLNSAASLGCNHIFCFVCIEKSMKSDSNCPVCKVPYRRR
EVRPAPHMDNLVSIYKSMEAASGVNIFDTQNLSSDNLSDGDKQVEGDSSGSKRLKTETSG
RTAYELRTLEKEPQKIQKSKRKNSASSPPKPSFPRKKRVQVPQRPLSETPTRPVKLACSL
NEVNEEEPRKGTDASEDKGQPVLSPFFWLRERDEEDEKSNQESDLDQPTDSMSMNVLSFS
DIKDSLEESTSKPPLEEVCGKPSNDLDLFDSEMFEWTQRACSPELCSSPFKRQVEDIAGT
ETSLLAAAPDEELRKQNPNGSYNRISDILDILVPNVPPLEGNSVKDHTARANFTRKGRKK
KEIALKKCSKRLAEAATGKYSQSATETECSSQKPQHDVINSFGSLKNSTKRSNKKMHFDT
DANKAIFESVPAVPINLATPNENFKTKTPAFPEVEKVNQFPEKSRKNDRASKKTLFGIDA
IKATPENVPADPVSLGAPDGGHKNFGTEILALPKDEKVYELPESSCKKGRSRKKAHFGKN
ANKTILEDIPAHPISLGTPNDGPENFQSEVSAFQEVEKASQFPEKSSKNGGAHGDQRVVQ
CRMKSKKQKLDSVDDKLQENPYFNQDQHDNSANPVLITAPPAIATPTDQKSAHEKQEKIF
SVCVITSEYDNITQGKYVGAQENEGQLSEKLGCSDDAENLDSMTKKGCSEKRERFDDEFQ
CAFCRSSEESEASGRMGHYFNGKPIDTDAIKNSKVVHAHWNCVEWAPNVYFDGSTAINLE
AELSRSRRIKCGCCGNKGAALGCYEKNCRKSFHVPCAKLMPQCRWDTENFVMLCPLHPDS
KLPSQDLEPQELKSSCAPKRQSNTKCIAVAREIGNHGRFTFRESSKKLVLCCSALTTAER
EAVAEFQRLSGVPVLQKWDDSVTHIIASTDENGACKRTFKILMGILEGKWILGIEWIKAC
IQDMEQIEEERFEIALDVHGIRDGPQLGRLRVLNNQPKVFSGFKFFFTSDFLPSYKGYLQ
QLATAAGGTILLRKPVSSNNQSSSCSSPNCQVFIIYSLELPGQCNPGEKNEILNRRRSNA
EVLAKSATAKVATNLWLLNSIASSKLRSLVE
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgggggatccaagccatctggagaagatgggaatagagcttaaatgcccaatttgtctc
agtcttttgaactctgccgcttcactcggatgcaaccacatattctgctttgtatgtata
gagaaatcaatgaaatcggattcgaactgcccagtttgtaaggtgccttatcggcgaaga
gaagttcgtcctgctccacacatggataatttggtgagcatttacaaaagcatggaagct
gcttcgggagttaatatatttgatacccagaatttgtcttctgataatttatctgatgga
gacaaacaagttgaaggtgatagcagtggttcaaaacggctcaaaacagaaaccagtggg
agaacagcttatgaactgagaactttggaaaaagagccacaaaaaatacaaaaatccaag
cggaagaattctgcttcttcccctccgaaaccttcatttccaagaaagaagagggttcag
gtgccacaacgtcctctttcagagacacctacccgacctgtaaagttagcatgtagtctt
aatgaggtgaatgaagaagaaccgagaaaaggtacagatgcttcggaggataaaggtcag
ccagttctttcaccttttttttggttgagagaaagagatgaagaagatgaaaagtcgaac
caggagtcggatttggatcaacctacagactcgatgtcaatgaatgttctttccttcagt
gatatcaaggattcattggaagaaagcacttcaaagcctccattggaggaagtgtgtggc
aagccatccaacgacttggatctctttgatagtgaaatgttcgaatggactcaaagagcc
tgttcccccgaactttgttcaagtccctttaaacggcaggttgaagatattgctggaact
gaaacatcattattggcagcagcccctgatgaagaactaaggaagcaaaatccaaatgga
agctataatcgaattagtgatatcctggacatcttggtacctaatgtgccccctctggag
ggcaacagtgtgaaggatcatactgcgcgtgctaattttaccagaaaaggtaggaagaaa
aaggaaattgctctgaagaaatgttctaaaagattggcagaagccgctactgggaaatat
tcccagtcggccaccgaaactgaatgctcgagtcaaaagccgcagcacgatgttatcaac
agctttggtagtctgaaaaatagtaccaaaagaagcaataagaaaatgcacttcgatact
gatgcaaataaggctatttttgaaagtgttcctgccgttccaattaatttagcaacacca
aatgagaatttcaaaaccaagacaccagcctttccagaagtggaaaaggttaatcagttc
ccagaaaagagtcgcaagaatgacagagccagcaagaaaacactctttggtattgatgct
attaaggcgactcctgaaaatgttcctgctgatccagttagtttaggagctccagatggt
ggacataagaattttggaaccgaaatattagctttacccaaagatgaaaaggtttatgaa
ctccctgaaagtagttgcaagaaaggcagaagcaggaagaaagcgcactttggtaaaaat
gcaaataagacaattcttgaagatattcctgcccatcccattagtttaggaactccaaac
gatggtcctgagaattttcaatcagaggtatcagcttttcaagaagtggaaaaggctagc
caattccctgaaaaaagtagcaagaatggcggagcccacggagaccagagagtggtccaa
tgccgcatgaagtctaagaaacaaaagctggattcagtggacgacaaactgcaagagaac
ccatatttcaatcaggatcagcacgataattctgctaatcctgttttgatcaccgcaccg
cctgcaattgctacgccaactgatcaaaagagtgcacatgagaaacaagagaaaattttc
tctgtttgcgtaataactagtgagtacgataacatcacccaagggaagtatgttggtgct
caggaaaatgaaggtcaactctctgaaaagcttggatgcagtgacgatgcagagaacttg
gattctatgaccaaaaaaggttgttcagagaaacgagaaagatttgatgatgaatttcaa
tgtgctttctgtcgctcatcagaagaatcagaggcttctggaagaatgggccactatttc
aatgggaagccgatcgatacagatgccatcaaaaactcaaaggtcgtacatgcccactgg
aattgtgttgaatgggcgcccaatgtttatttcgatggctccactgcaattaaccttgaa
gctgagctcagtagaagtcgaagaattaaatgtggttgctgtggaaataagggtgctgct
cttgggtgttatgagaagaattgtcgcaagagctttcatgttccttgtgcaaagttgatg
cctcaatgtcgatgggataccgaaaattttgtgatgttatgccctctgcatccggattct
aaactgccaagccaggatctggagccccaagaactgaaaagcagttgcgctcctaagcga
caatcgaacactaaatgcatagctgttgcacgtgagatcggcaatcatggaaggtttaca
tttcgtgaatcatctaagaaattggttctgtgctgttcagctctcaccacagcagagagg
gaagctgtagctgaatttcagagattatctggagttccagtgttacaaaaatgggatgat
agcgttacacatataattgcatcaacggatgaaaatggagcatgcaaaagaaccttcaaa
attttgatgggtattttggagggaaaatggatattgggtattgaatggattaaggcttgt
atacaagacatggaacaaatagaggaagaacgctttgagattgctctagatgtccatgga
atcagggatggccctcaacttggaagattgagagtcctgaacaaccaaccaaaagtcttt
tctggattcaagttcttctttacatcagatttcttgccttcatacaaaggatatctccaa
caacttgcaactgcagcaggaggaactattctgcttagaaaaccagtttcaagcaacaac
caaagcagctcttgttcttcacctaactgccaagttttcatcatttacagtcttgagctt
cctggtcagtgcaatccaggtgaaaagaatgagattctcaatcgcaggcgatcgaatgcc
gaagtgcttgctaagtcggccacagccaaagttgcaacaaatttgtggcttttaaactcg
attgcaagcagtaaattaagaagccttgtggagtaa
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