Cucurbita pepo subsp. pepo (vegetable marrow): 111811558
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Entry
111811558 CDS
T05351
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111811558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111811558
04121 Ubiquitin system [BR:
cpep04121
]
111811558
03036 Chromosome and associated proteins [BR:
cpep03036
]
111811558
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111811558
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111811558
Ubiquitin system [BR:
cpep04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
111811558
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
111811558
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
111811558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_2
zf-HC5HC2H_2
zf-RING_2
Prok-RING_4
zf-C3HC4_4
zf-RING_5
zf-RING_6
PTCB-BRCT
RTT107_BRCT_5
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
111811558
NCBI-ProteinID:
XP_023554232
LinkDB
All DBs
Position
LG15:727063..733273
Genome browser
AA seq
685 aa
AA seq
DB search
MADFSSNVRANANTSRFLNPWVLHFQKMGLELKCPLCLSFFDEPVLLPCDHLFCKSCMPF
ASQIGSECPLCKAGFVDRDLRPAPFMDKMVSIYRSLDATFATNMSKLVSAVDVGATVEKS
RFVQSTPCAGPNCKEFQGCSMPADCKCENLDIESRKGSYGRHEDCRMPPVSQTDQLSAGS
PPPFGDGKVSDDSSDEYRGHGSKNDSDRRSVIANADDKKLQLSKCTSSVSEEEGHQRDPK
RQKFDYGQLKSGSSSVDQTHPPASELGNSETSNSEMEHKSQVTIASNLPLADAEDAIVRN
AKCAFCQSSKVTEDTGPVLHYLNGSLVVGVEAANPNVIHAHKLCVDWAPQAYYQGDDVHN
LKSEVARGSKLKCSKCGLKGAALGCYSKSCQKSYHVPCALEIEECRWDTDNFLLLCPSHS
SARFPDERSKSRKMPRNQASPFRMNQQDSNNWASPSDGVKKWAFCGSALSAEERNILVKF
AKISGATVSKFWKPDVTHVIASTSENGACTRTYKVLMGILNGVWILNMDWVKACMKERRP
LNEEPYEIALDNYGCTDGPKSGRLRVLNHAPKLFTGLSFYFTSDFPPAYEEDLQDLVITA
GGTILENEELAAPSCSSDQAAAPKVLVVYNLDSPGGCKVGEEVSILWQRLNDAEGIAAKV
GAQVIGHTWLVESIAAGNLQPFVSC
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcggatttttcaagcaatgttcgtgctaatgctaatactagcagattcttgaaccct
tgggtgcttcatttccagaaaatggggcttgagcttaaatgtcctctctgcttgagcttc
tttgatgagccagttctgcttccatgcgatcacctcttttgcaagagttgcatgccgttt
gcttcacagattggatcagagtgtcctttatgcaaagcaggatttgtcgaccgagacctg
aggcctgctcctttcatggacaagatggtgtcaatctacaggagtctggatgcgacattt
gctactaatatgtctaaactagtctcagctgtagacgttggggcaactgtggagaaatca
cgttttgttcagtctaccccttgtgctggccccaactgcaaggagtttcagggatgtagc
atgcctgctgattgtaagtgtgaaaatctcgatattgagagtagaaagggtagttatggg
aggcatgaagattgtagaatgccgcctgtgagtcagacagaccagttatcagcaggaagc
ccacctccgtttggtgatggcaaggtgtcagatgacagtagtgatgagtaccgcggtcat
ggatctaaaaatgattcagacaggagatctgttatagctaatgccgatgataagaagctg
caattgtctaagtgtacgagttctgtttctgaagaggaaggtcaccagagggaccccaag
agacaaaagtttgattatggccagttaaagtcaggctcaagcagtgttgatcaaacccat
cctccagcttcagagcttggaaattctgaaacttcaaattctgaaatggaacacaaatct
caagttactattgctagcaatctgcctcttgctgatgcagaagatgccattgtgagaaat
gccaaatgtgcattttgtcagtcctctaaagttacagaggatactggacctgtcctgcat
tatttgaatggcagtttggttgttggagttgaagcagcaaatccaaatgttatacatgct
cacaagctttgcgttgattgggcaccacaggcatactatcaaggtgatgatgttcataat
ttgaagtccgaagtggcaaggggttcaaagctcaagtgtagtaaatgtgggctaaaagga
gcagccctgggttgttattcgaagtcttgccagaaaagctatcatgtaccttgtgcactt
gaaatagaggagtgccgttgggacacggataattttcttcttctgtgcccctcgcattca
tcagcaagatttccagatgaaaggtccaagtccaggaagatgccgagaaatcaggcttct
ccatttcgaatgaaccagcaagattcaaacaattgggcatctccatcagatggggtaaaa
aagtgggcgttttgtgggtcagctctgtctgctgaagaaaggaatattttggtcaagttt
gcaaaaatatctggtgccactgtgtccaaattttggaagccagatgtgactcatgttatt
gcatccacatctgagaatggtgcctgtactcggacatataaagtccttatgggcatattg
aatggagtatggattctgaatatggattgggtaaaagcttgcatgaaagaaaggcgtcct
ttgaacgaggaaccttatgaaatagctcttgacaactatgggtgtactgatggtcccaaa
tctggcaggctgagggttttaaaccatgcacccaaactcttcactggcttaagtttctat
ttcactagtgactttccacctgcttacgaggaggatcttcaagatttggttataactgca
ggaggtaccatattggagaacgaagaattggctgcaccaagttgtagtagtgaccaggct
gctgcaccaaaggtgctagttgtttataatctcgactcccctggaggatgcaaagttggg
gaggaggtttcaattctctggcaaagattaaatgatgctgagggaatagctgctaaagtt
ggagcccaagtcattggtcatacatggcttgtggaatccattgcagcgggtaacttgcaa
ccttttgtcagctgctaa
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