Chiloscyllium plagiosum (whitespotted bambooshark): 122551437
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Entry
122551437 CDS
T08871
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122551437 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122551437 (bard1)
04121 Ubiquitin system [BR:
cpla04121
]
122551437 (bard1)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122551437 (bard1)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122551437 (bard1)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122551437 (bard1)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
122551437 (bard1)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122551437 (bard1)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122551437 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_4
Ank_2
Ank
zf-RING_6
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4_2
RTT107_BRCT_5
zf-C3HC4
zf-RING_10
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
122551437
NCBI-ProteinID:
XP_043549275
LinkDB
All DBs
Position
7:28484158..28662020
Genome browser
AA seq
788 aa
AA seq
DB search
MSGPHRGQSWAHTAGALAALEGLLQCSACCKLLQEPVCLGGCEHVFCRVCVADSLGTNCP
VCHTPTWVKDLQPNRQLHNIADLCSQLRVLLNVRDSPGAKCKPTGSVIGPEDVTGKKWQM
RTWFSPRSKKMRCVLDMNASRKNQKVASSSDFNGSSSSVFEFMSSPSPPLNSPKKKAPIN
SKQRVRKRLADANKGWGFGKRRSKKMERGNDSPENIDYHRVVSFCSQPVVLSSQGQTVAD
ETAEESLAVPQDDNVIDSSAESLTKNLIESSSEACCTPTVSSCKDISLGQTFNQEGDTFS
LVPIPATHTNAKRSRKSSDSRNLTLAKKSRKEVQNSCFEKSSAIVCEQAKLDTQQELSAT
PARQTELSRSINQTQAPSTENNCGTPSSRYNTQEKQCATPKSPQTPQATFRSQLPGSCAM
TPISPLTPTMKRNHKGETPLHIASIKGDIAAVEQLLENGANPNIKDNAGWTPLHEACNHG
HLEIVERLLKFGVLLNTPGYQNDSPLHDAVRNGHVEVVKLLILHRASQNVINIFGLRPVD
YANSEEMIAALHHSPKNEDPVAEHCFAVTSNQRRDGPIVLLGSDLLGAKKKKLDKLVKLL
KAGNCTEFNTSVTHIIVPNDQALSTMKCLMGIVSGCWLMNFEWVTACLEKNDRVAEEDYE
INIVNGPERGRQNQEQQLPKLFDGCHFYFMGPFKSCKKEDLVNLVKVGGGQVLARQPKPD
SDVTQSINTVAYHASPGSDQSFCTQYIISDKDSNYKPERVRLGKVWTTHSTWLIDCVKAF
ELLPITEH
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggccacatcgcggacagagctgggctcacacagcgggggccctggccgcactc
gaggggctgctacagtgctcggcctgttgcaaactgctgcaggagcctgtctgtcttgga
ggctgtgagcatgtattttgccgagtttgtgttgctgattctcttgggacgaattgtcca
gtgtgtcacactccaacctgggtaaaagacctgcagccaaacagacagctgcacaatatt
gccgacctgtgcagccagcttagagttctcctgaatgtcagagactctccaggtgccaaa
tgcaaaccaactggatcagtaatcggacctgaagatgtaactggtaaaaaatggcaaatg
agaacatggttcagtccacgcagtaaaaaaatgaggtgtgtgctcgatatgaatgcttcc
aggaagaatcagaaagtggcttccagttctgactttaatgggtcatcatcatctgtgttt
gaattcatgtcatcaccatctcctccactcaactctccaaagaagaaagctccgattaac
tcaaaacagagagtaaggaaaagattagctgatgccaataaaggttggggttttggaaag
agaagaagcaagaaaatggagagaggaaatgacagccctgaaaatatagattatcataga
gttgtctcattttgcagccaaccggtggtcctcagcagtcagggacaaacagttgcagat
gagacagctgaagagtcacttgctgtgccacaggatgacaatgtaatcgactccagtgca
gaatctttgaccaagaatttgattgagagttcttctgaagcatgctgtactccaacagtc
tccagttgcaaagatatttcccttggacaaactttcaatcaggaaggagacacattttct
cttgtccccatcccagccacacacacaaatgctaaaagatcaaggaaatcatcagattca
cgcaacctgactcttgccaaaaagagcagaaaagaagtacagaattcttgctttgaaaag
tcatctgcaattgtttgtgagcaagctaagttagacacacaacaggaactttcagctact
ccagcacgtcaaactgagttaagcaggagcattaatcagacacaagccccttcaacagaa
aataactgtggtacaccatctagcagatacaatactcaagaaaagcaatgtgcaacccca
aaatctcctcaaacaccacaagctacatttagaagccagttacctggaagttgtgcaatg
actccaatctcacctcttactcccacaatgaaaagaaatcacaagggtgagactccactt
cacatcgcttccataaagggtgatattgcagcagtggagcagcttttggagaatggagcg
aatccaaacatcaaagataatgctggatggacaccattgcatgaagcatgcaaccatgga
cacttggaaattgtagagcggctgctgaaatttggcgtactactgaatacaccaggatac
cagaacgattctcccttgcacgatgctgttaggaatggacacgtggaagttgtaaagctg
ctgatcttacaccgtgcctctcaaaatgtgatcaatatttttgggctgcggcctgttgat
tatgcaaattcagaagaaatgatagcagctttacatcactcccccaaaaatgaggatcca
gttgctgagcactgctttgcagtgacttcaaaccagagaagagatggaccgattgtgtta
cttggaagtgatctccttggagccaagaagaaaaaacttgacaaattagtaaagctgttg
aaagctgggaactgcactgaatttaatacctcggtgacgcacattattgttcccaatgat
caggctctctctaccatgaagtgtttgatggggatcgtctctggctgctggcttatgaat
tttgaatgggtgacagcttgcctggagaagaatgacagagtagctgaagaagactatgag
ataaatattgtaaatggtcccgaacgtgggcgacagaaccaggagcaacagctaccaaaa
ctatttgatggctgccacttctatttcatgggtccattcaaaagctgtaagaaagaagat
cttgttaatttggtcaaggttggtggggggcaggtccttgcccggcagccaaaaccagac
agtgacgtgactcagagcatcaacactgtggcttaccatgcatcccctggctcggatcag
tcgttttgtacacagtatatcatctctgacaaagacagtaactataagcctgaaagagtg
aggttaggcaaagtgtggactacccattctacatggctgattgactgtgtgaaagcattt
gaactgctgccgataaccgaacattaa
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