Cololabis saira (Pacific saury): 133456962
Help
Entry
133456962 CDS
T09849
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
csai01009
]
133456962 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133456962 (hdac6)
04131 Membrane trafficking [BR:
csai04131
]
133456962 (hdac6)
03036 Chromosome and associated proteins [BR:
csai03036
]
133456962 (hdac6)
Enzymes [BR:
csai01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
133456962 (hdac6)
Protein phosphatases and associated proteins [BR:
csai01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133456962 (hdac6)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
133456962 (hdac6)
Membrane trafficking [BR:
csai04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
133456962 (hdac6)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
133456962 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
133456962
NCBI-ProteinID:
XP_061591690
LinkDB
All DBs
Position
12:complement(15931909..15949932)
Genome browser
AA seq
1076 aa
AA seq
DB search
MPSDSDPPGPGLKSVRRSPRLSPQGSSSKGNTERRQGGSLQEAKRRGKMERSREDQEAEL
SGRLQQLDLSSRSAASGTGLVYSEIFTHHQNLWESSHPESPDRVKSIMEELQKQELLSRC
VTVEARKATEEELLLVHTRRYVDLVKSTETMTEAELQTLSNGYDSIYLHPETFQVCLSAV
GSVLQLVDEVMTSKLRNGFAVVRPPGHHAQADEANGFCVFNNVAIAARYAQSKHAASRVL
IVDWDVHHGQGIQYLFQDDPRVLYFSIHRYEQASFWPHLPESDSSFVGSGRATGKTINLP
WNKTGMTDADYITAFQQVLLPVAYEFQPDLVLVSAGFDAAAGDPKGEMCVNPQCFHILTH
MLMSLAEGRLVLTLEGGYNLQATAEGSAACVRALLGGACPPLNTPTVPCDSALESISQTI
SAVCPHWSRLQVLEGGALAAGDDVIRAANNDERKTEAEPAPFIAMTTGLVYDERMMDHLN
LWDRHHPEQPQRIFKIFSKHQQLGLANRCQRIPARLATEEDLAMCHSVQHIKRMKATATM
KPRDLNRVGNDFNSVFFNNQSFQSAQLAAGGVFNAVDRILSGQVRNGVAIVRPPGHHAER
DAPCGFCLFNTAALAARHAQKVSQDPRLRVLILDWDVHHGNGTQHMFEDDDSVLYISLHR
YDNGTFFPSSEDAAPDRVGVAKGAGYNVNVAWNRGRMGDSDYLAAFHHVVMPIATEFNPG
LVLVSAGFDAARGDPLGGYQVTPEGYAHLTHMLMSLAGGRVLLILEGGYNLTSISDSMTM
CASMLLGDLPPSLATPLPPPHHSAVAAINEVIRHQARYWRSLRIHIPESVRMLLPSPKHR
GKRTPKGKDRKSDQSGTDKPPVDISTTECGLEQLTQGLAGLDISQTSAASTPVGGARPKL
RPHPEPVEGEVKVESGDSQSADSELPKAVTVATAEPPASGAGEVPETGGACGWSKTQTSL
ELTPMYVVDPLSWCPHLDAVKPLPPSGVDVSLPCQDCGSDAENWICLSCYQVFCGRYVNE
HMVVHGVVSEHPMVLSFSDLSVWCYMCESYVHNQILFEVKNAAHFTKFGEEIPPWT
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctgactcggatcctccaggacctggactgaagtccgtcagaagatctcctcgt
ctctcgccacagggcagcagcagcaaaggaaacacggagaggagacaaggaggcagtcta
caggaggcgaagaggagagggaagatggagaggagcagagaggatcaggaggcggagctg
agcggccgtctgcagcagctggatctgtccagcaggtctgccgccagtggaactggtctg
gtttactctgaaatcttcacgcaccaccagaacctgtgggagtccagtcatccagagagt
ccagacagagtgaagtccatcatggaggagctgcagaagcaggagctgctgagtcgctgc
gtcactgtggaggccagaaaagctacagaagaagaacttctgctggttcacacgagacgt
tacgttgacctggtgaagtcaaccgagacgatgaccgaggccgaactccagactctgtcc
aacggatacgactccatctacctgcatcctgagaccttccaggtgtgtttgtcggcggtg
ggctcggtcctccagctggtcgatgaggttatgacgtcaaaactcaggaacggcttcgct
gtcgtcagacctccaggtcaccacgctcaggccgacgaggccaacggtttctgcgtcttc
aacaacgtggcgatcgccgctcgatacgcccagagcaaacacgccgccagcagggttctg
attgtggactgggacgtccatcacggtcagggaatccagtacctgttccaggatgatccc
agggtcctgtacttcagcattcacaggtatgaacaggcctccttctggcctcacctgcca
gaatcagacagcagtttcgttgggagcggacgagctacaggaaagaccatcaacctgccc
tggaacaagacgggcatgaccgacgctgactacatcacagccttccagcaggtgctgctg
cctgtggcctatgagtttcaacctgatctagttctggtctctgctggattcgacgctgca
gctggagacccgaagggagagatgtgtgtgaatcctcagtgtttccacattctgacgcac
atgttgatgagtttagctgaaggtcgacttgttctcactctggagggaggctataacctg
caggcgacagcagagggctctgcagcctgtgtcagggctctgctgggcggagcctgtcct
cctctcaacacacccactgtgccatgtgacagcgccctggagtccatcagtcagaccatc
tctgctgtctgtccccactggagccgcctacaagtgctcgagggcggtgcgttggctgca
ggtgatgatgtcatcagagcagcaaacaatgatgagaggaaaacagaggctgaacccgcc
cccttcatcgccatgaccaccggtctggtgtacgatgagcggatgatggatcacctgaac
ctgtgggacaggcaccaccctgaacagccgcagagaatcttcaagatcttctccaaacat
cagcagctgggattggccaatcgttgccagcggataccggctcgtctggcgacagaagaa
gacctggccatgtgtcacagcgtgcagcacatcaaacggatgaaggcgacggcaaccatg
aagcccagagacctgaatcgagtcggaaacgacttcaattccgtcttcttcaacaaccag
agcttccagagcgcccagctggctgccggaggcgtcttcaacgctgtggacaggatcctg
agtggacaggtgaggaacggcgtggccatcgtccggccgccgggtcatcacgctgagaga
gatgccccctgcgggttctgcctcttcaacacagcggcgctcgctgctcgccacgcccag
aaagtctcccaagatcctcgactaagggtcctgattctagactgggatgttcaccacggc
aacgggacacaacacatgtttgaagacgatgacagcgtcctctacatctccctccatcgc
tatgacaacgggacattcttcccatcctcagaggacgctgctcctgacagagtgggcgtg
gccaaaggggcagggtataacgtgaatgttgcctggaacagaggacggatgggcgactca
gactacctcgcagcttttcaccacgttgtcatgccgattgctaccgagtttaaccccggt
cttgttctggtgtcggccggctttgatgcagctcggggggatccgctgggtggatatcaa
gtgactccggagggatacgcccacctcactcacatgctgatgtcactggcgggggggcgg
gtgctcctcatcctggagggtggctacaacctgacctccatctctgactccatgacaatg
tgcgctagcatgttgctcggagaccttcctccgtccttggccacgcccctcccgcctcct
catcacagcgccgtggcggccatcaatgaggtcatccgacaccaggcccgctattggagg
agtctgagaattcacattccagagtcagtgcggatgctcctcccgtccccaaagcaccgt
gggaaacggactcctaaaggaaaagacaggaaatcggaccagagtggtaccgacaaacca
ccagtggacatctccacgacggagtgcggtctggagcagctcacgcagggattggccggt
ctggacatcagtcagacttcagctgcatccaccccggtgggcggggccaggccaaagctc
cgcccacaccctgagccagttgaaggtgaagtgaaggtggagtcaggagacagccaatca
gcggacagcgagctccctaaggctgttaccgtagcaacagcagagccacctgcatccgga
gcgggggaggtgccggagacggggggagcgtgtggttggtcgaagactcagacgtctctg
gagttgacaccgatgtatgtggtcgaccctctgtcctggtgtcctcacctcgacgctgtc
aagcccctccccccctcaggggtagacgtctcactgccctgccaggactgcggttcagat
gctgagaactggatctgtctcagctgctaccaggtgttctgcggtcgctacgtgaacgaa
cacatggtggttcacggtgttgtgtcagaacatccgatggtgctgagcttctcggatctc
tctgtgtggtgctacatgtgtgagtcctacgtgcacaaccagattctgtttgaagtaaaa
aacgcggctcacttcaccaagttcggagaagaaatccctccgtggacctga
DBGET
integrated database retrieval system
