Camelina sativa (false flax): 104761555
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Entry
104761555 CDS
T05044
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104761555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104761555
04121 Ubiquitin system [BR:
csat04121
]
104761555
03036 Chromosome and associated proteins [BR:
csat03036
]
104761555
03400 DNA repair and recombination proteins [BR:
csat03400
]
104761555
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104761555
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
104761555
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104761555
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104761555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_2
zf-RING_5
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-HC5HC2H_2
zf-RING_6
zf-RING_10
Prok-RING_4
RTT107_BRCT_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
104761555
NCBI-ProteinID:
XP_010482960
LinkDB
All DBs
Position
3:1443919..1447491
Genome browser
AA seq
716 aa
AA seq
DB search
MADFTNMLMNPWVLHLQKLELELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSKAESSCA
VCKSKYPRKAQRNLHFMESVISIYKSLNSAVSVHLPQLQIPNDCNYKSDALNISNSPKDG
GSEDSEMTDKDASKLNHGGDFSSHDGSPLPTSEDSIPRPKHQNWTAEKLRDHLPLYVFES
ENDAGNHTPESHKGQVVKSPSDSTASEQPGNAARKRICGIHESKLNTQDGTLLRLMESLR
SDDPTDYVKVQKHQQLPERHTEQDTKRKRDITAYEAMENHLKVPKREKNLMQKVDDIDCN
DNCSANSDDHQIGKTSKASDFTPHVVWDQSSSNITICGFCQSARVSEATGEMLHYSKGKP
VAGDDIFRSNVIHVHSACIEWAPQVYYEGDTVKNLKPELARGMKIKCTKCSLKGAALGCY
VKSCRRSYHVPCAREMSRCRWDYEDFLLLCPAHSSVKFPNEKSGHRVSRAEPLPKTSPAE
VCSLEKTPAITKDLVLCGSALSKSDKNLMESLAVKFNATISRYWNPNVTHVIASTDEKGA
CTRTLKVLMGILNGKWIVNADWIQASLEASQPVDEETFEIHIDSQGCQDGPKSARLGAAS
NKPKLFDGLKFYFFGDFYQGYKEDLQNLVKVAEGTVLNTEDELGAESSNRADDQRSPIVV
YNIDPPIRCALGEEVTIIWQRANDAEALASQTGSRLVGHTWLLESIAGYKLHPIIS
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcggattttaccaacatgctgatgaatccatgggttctccatctccagaagctcgag
ctcgagctcaagtgccccctatgcttgaaattgcttaaccgaccggtgttgcttccttgt
gaccacgttttctgcgattcatgtgtacacaaatcttcgaaagctgaatcaagctgtgct
gtgtgcaaatctaaatatcccagaaaggctcagaggaaccttcatttcatggaaagtgtt
ataagcatatacaaaagcttaaattcagctgttagtgttcatctcccacaattacagatt
cccaatgattgcaactacaagagcgatgcactgaacatttccaacagcccaaaagacggt
ggatctgaagattctgagatgactgacaaggatgcaagcaagctcaatcatggtggtgat
ttctctagtcatgatggttctcctcttccaacctcagaagatagtattccaagacctaag
catcagaattggactgcagagaagttgcgtgatcatctccctttatatgtgttcgaatca
gagaacgacgctggcaatcatacacctgaaagtcataaaggtcaagttgtcaaaagtccg
agtgacagcactgcttctgagcagcctggcaatgctgcaaggaagcggatttgtggtatc
catgaaagcaaattgaatactcaggatgggactttgctgcggttgatggagagcctccgg
tcagatgatcccactgattatgttaaagttcagaaacatcagcagttacccgaacgtcat
acagaacaagatacaaaacggaaacgtgacatcaccgcttatgaagcaatggagaatcat
ctgaaagtccccaagagggagaagaacctgatgcaaaaagttgatgatattgactgcaat
gataactgctctgcaaactctgatgatcatcaaattgggaaaacctcaaaggcatcggat
tttacaccacatgtagtttgggatcaatcatcatccaacataaccatatgtgggttctgc
caatccgctagggtatctgaggccactggagaaatgctgcattactccaagggaaaacca
gtggctggagatgacatcttccggtccaatgttatccatgtccacagtgcctgtatcgaa
tgggcaccgcaagtttattatgaaggtgacacagtgaagaacctgaaaccagaactggca
aggggaatgaaaatcaagtgcactaaatgtagtctgaaaggggctgccttaggctgctat
gtcaagtcttgccggcgaagctatcatgttccatgtgcaagggaaatgtccagatgccgt
tgggattatgaggactttcttcttctttgtccggctcattcttctgtcaaattcccaaac
gagaagtctggacatcgcgtatccagagctgagcccttgccaaaaacgtctcctgctgag
gtatgttctttggaaaaaaccccagctattacaaaagaccttgttctctgtggatcagcc
ctctctaagagtgataagaacctaatggaaagtttagccgttaaattcaatgcaaccata
tcaaggtactggaacccaaatgttacacatgtgattgcttcaacagacgaaaaaggagct
tgcacaagaacgttgaaggttcttatgggtattctgaatggaaaatggattgtcaatgca
gattggatacaagcaagccttgaagcttctcaacctgttgatgaagaaacatttgagatt
catattgatagtcaaggatgtcaagatggaccgaaatctgcaagactcggagcagcaagt
aataaaccaaagctctttgatggcttgaagttctatttctttggagatttctaccaagga
tacaaagaagaccttcagaatctagtcaaagtcgctgaaggcacagtcttgaacacagag
gatgagctaggtgcagaaagtagcaacagggccgatgaccaaagatcaccaattgtggtt
tacaacattgatcccccaattagatgcgccttaggggaagaagtcacgattatttggcaa
agagctaatgacgcagaggctttagctagtcaaactgggtctcggctcgttggtcacaca
tggcttttggagtccatcgctggttacaagttacaccctataattagctaa
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