Cucumis sativus (cucumber): 101222995
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Entry
101222995 CDS
T02486
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101222995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101222995
04121 Ubiquitin system [BR:
csv04121
]
101222995
03036 Chromosome and associated proteins [BR:
csv03036
]
101222995
03400 DNA repair and recombination proteins [BR:
csv03400
]
101222995
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
101222995
Ubiquitin system [BR:
csv04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
101222995
Chromosome and associated proteins [BR:
csv03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
101222995
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
101222995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-HC5HC2H_2
zf-C3HC4_2
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-RING_5
zf-RING_6
zf-RING_10
PTCB-BRCT
RTT107_BRCT_5
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
101222995
NCBI-ProteinID:
XP_011651611
UniProt:
A0A0A0LDW6
LinkDB
All DBs
Position
3:24693306..24699138
Genome browser
AA seq
679 aa
AA seq
DB search
MSGFSTTANTTRFLNPWLLHFQKMGLELKCPLCLNFFDDPILLPCNHLFCKSCMPFAAQI
GSVCPLCKAGFVDRDMRPAPFMDKMVSIYRSLDATFSTNMSKLVSTVDVGAAVEQSRFGQ
SVSYVANNCKEFEGCSMPVDSKRQHLGIEGRKGEHGRHEDCVMPPVSQTDQLSSGSPPSF
GDGKVSDDSSDEYRGHGSKNTSDWISVITSADDKKLQLSKCTSSASEEEGHLRDLKRQKL
NYGQLKFRISSADQTHPPVSEPGNSETSNSGMEHKSQVTNASSMPLADADDTIVRNVKCA
FCQSSKVTEDTGAVLHYMNGRLVDGVEAASPNVIHVHKLCVEWAPQAYFQGDDVHNLKAE
VARGSKLKCSKCGLKGAALGCYLRSCQKSYHVPCALEIDECRWDMDNFLVLCPSHTSARF
PDERSKPRKMPRDQASLFQMNQKDLSNWASASDGVNKWTFCGSALSAEERNILVKFAKLT
GATVSKLWKPDVTHVIASTDENGACTRTYKVLMGILNGIWILNMDWVKDCMKEKCPLNEE
AYEIALDNYGCTDGPKTGRLRVLNKEPKLFIGLSFYFTGDFPPAYEEDLQDLVITAGGTV
LEDEELAATSSNDQAAPKVVVVYNLDSPGGCKVGEEVSILWQRMNEAEGIAAKVGAQVIG
HTWLVESIAMGSLQPFVSC
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttctcaactactgctaacaccactaggttcttgaacccttggcttcttcat
ttccagaaaatgggacttgaactcaagtgtcctctctgcttaaacttcttcgatgatcca
attctgcttccttgcaatcacctcttttgcaagagttgcatgccatttgcagctcagatt
ggatcggtttgccctctgtgcaaagcaggatttgtcgaccgagacatgaggcctgctcct
ttcatggacaagatggtgtcaatttacaggagtctggatgcgacattctctacaaatatg
tcaaaattagtctcaactgtagatgttggggcagctgtggagcaatcacgttttggtcag
tctgtttcttatgttgccaacaactgcaaggagtttgagggatgcagcatgcctgttgac
agtaaacgtcaacatcttggcattgagggtagaaaaggtgaacatgggaggcatgaggat
tgtgtaatgccacctgtgagtcagacagaccagttatcatcaggaagcccaccttcgttt
ggtgatggcaaggtctcagatgacagtagtgatgagtaccgtggtcatggatctaaaaac
acttcagattggatatctgttataactagtgctgatgacaaaaagttgcaattgtcgaag
tgtacaagttctgcttctgaagaggaaggtcacctgagggacctcaagagacaaaagttg
aattatggtcagttaaagtttcgcataagcagtgctgatcaaactcatcctccagtttca
gagcctggaaattcagagacttcgaattctgggatggaacacaaatctcaagtaactaat
gctagcagcatgcctcttgccgatgcagatgacaccattgtgaggaatgtcaaatgtgcg
ttttgccagtcatctaaagttacagaggatactggagctgtcctgcattatatgaatggc
agattggttgatggagttgaggcagcaagtccaaatgtcatacatgttcacaaactttgt
gttgaatgggcaccgcaggcatactttcagggtgatgatgtccataatttgaaggctgaa
gtggcaaggggttcaaagcttaagtgcagtaaatgtgggctaaaaggagcagccctaggt
tgttatttgaggtcttgccagaaaagctatcacgttccttgtgcacttgaaatagacgag
tgccgttgggacatggacaattttcttgttctgtgcccctcacatacgtcagcaagattt
ccagatgaaaggtcaaagcctaggaagatgcctagagatcaggcttctctatttcaaatg
aaccagaaggatttgagcaattgggcatctgcatcagatggggtaaacaaatggacgttt
tgtgggtcagctctgtctgctgaagaaaggaatattctggttaagtttgcgaaattaact
ggtgccacagtgtccaaattatggaagccagatgtgactcatgttattgcgtccacagat
gagaatggtgcatgtactcgaacatataaagtcctcatggggatattgaatggaatatgg
attctgaacatggattgggtaaaagattgcatgaaagaaaagtgtccactgaacgaagaa
gcttatgaaattgctcttgacaactacgggtgtactgatggtcccaagactggcaggctg
agggttttaaacaaagaacccaagctcttcattggcttgagcttctatttcactggtgat
tttccaccggcctacgaggaggatcttcaagatttggtaataactgccggaggtactgtt
ttggaggacgaagaattggcagcaacaagttccaatgaccaggctgcaccaaaggtggtg
gttgtttataatctcgattctcctggaggatgcaaagtgggggaggaggtttctattctc
tggcaacgaatgaatgaggcagagggaatagctgcaaaagttggagcccaggtcattggt
cacacatggcttgtggaatccattgcaatgggaagcttgcaaccttttgtcagctgctaa
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