Crotalus tigris (Tiger rattlesnake): 120299540
Help
Entry
120299540 CDS
T08476
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ctig01009
]
120299540 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120299540 (HDAC6)
04131 Membrane trafficking [BR:
ctig04131
]
120299540 (HDAC6)
03036 Chromosome and associated proteins [BR:
ctig03036
]
120299540 (HDAC6)
Enzymes [BR:
ctig01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
120299540 (HDAC6)
Protein phosphatases and associated proteins [BR:
ctig01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120299540 (HDAC6)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120299540 (HDAC6)
Membrane trafficking [BR:
ctig04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120299540 (HDAC6)
Chromosome and associated proteins [BR:
ctig03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
120299540 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
120299540
NCBI-ProteinID:
XP_039180374
LinkDB
All DBs
Position
Unknown
AA seq
1146 aa
AA seq
DB search
MVSLAEGERRREVTASGGALGERDRETDRTQDVGRAWPGSLSARIEGGSISMASDLGNGS
VLDPKSVPALDIQAPLKKANRKGGLPEAKRKGRAKKMNKDAEDLLLGLQQLDLTSECAAP
LGTGLIWDNRMTEFCCPWNESFPECPERLVTIRDKLLQYELLERCVPVLGREISEEEILL
AHSQEYFTLMKSTETMSETELRSLADTFDSVYLHPNFYRCACLAAGSVLQLVEKVWSGEL
RNGLAVVRPPGHHAHRSKMNGYCMFNNIGIAAQYARQKLGVERVLIVDWDVHHGQGLQYL
FEENPSVLYFSIHRYEGGNFWPHLPESDSHAVGRGRGEGYNINVPWNQTGMRDADYLSAF
LHVLLPVALEFQPQMVLVAAGFDAVIGDPKGEMAATPACFAQLTHLLKSLAEGKLILSLE
GGYNLQSLAEGTCTVLKTLLGDPCPLMESPFLPCSSALSSVSQTIAVHSKYWKNLRRISA
DVPQEDGKLSVAWPSANPVSVADTLSRSAAELIQPQPPSCTGLVYDEKMMEHYNMWDSHH
PELPQRVSRIFQRHRELHLTERCCRLPARLASEEELQMCHSLAYVETLKSTATMKSRELH
RQGDQYNSVYICASSYECARLAAGSAFSAVEAVLSGKTQNAVAIVRPPGHHAESDTACGF
CFFNSVALAARHAQRLAQRPLRVMILDWDVHHGNGTQHIFEKDPSVLYISLHRYDNGTFF
PTSEDADYDRVGVGPGEGFTLNVPWNCSRMGDSEYLAAFHQIVMPVGYEFNPELVLVSAG
FDAARGDPLGGCLVTPECYAHMTHLLLGLAGGKVAVVLEGGYNLESISESMTMCTRSLLG
DPPPPLGRLKPPHLSALQSLARVAAVHRKYWASLRLEVPATLWEKPRTRAGKETPVPHEI
PDQAPQELLQSPVAQSVEAIGDAVAGLGSLQLEDNLMEEGETASSSLSPDSSPVGEETQP
KVDGSPKEVEPVEDAPREGVLAEGFPAEVMAPDKGASLQHHRQVNIEVVLLDEAAGGCSS
SDKQLGEDGADSGLFYAVTPLPWCPHLSSVLPVPPVGLNVLEPCAECGSEMENWVCLVCY
KVYCGRYINQHMLDHNKDSGHPLVLSFADLSAWCYDCEAYIHHPVLLEAKCQAHKLKFGV
DMHLPS
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggtttccctcgcggagggggagcggcgccgcgaggtgacagcatcaggcggcgccctg
ggggagagagacagagagacagaccggacacaggacgtgggaagagcgtggccgggcagc
cttagcgccaggattgaaggaggcagcatctcaatggcttctgatttgggaaatggctca
gtattggaccccaaatctgtgcctgctttggacattcaagctccattgaaaaaggctaac
aggaagggagggcttccagaggccaagcggaaaggacgggcaaaaaagatgaacaaagat
gctgaagatctgcttttgggcctgcagcaactggatcttacttcagaatgtgctgctcct
ttaggaactggactgatttgggataatcgaatgactgaattttgctgcccgtggaatgaa
agtttcccagagtgtccagagcggttggtgactattcgggacaaactgcttcaatatgaa
ttgttggaacgttgtgtcccagttttgggccgagaaatttctgaggaagagatcctcttg
gctcacagtcaagaatacttcacgctcatgaaatcgactgaaacaatgagtgagaccgag
ttaaggtctctggcagatacttttgattctgtttacctgcatccaaatttctaccgctgt
gcctgccttgctgctggttctgtcttgcaacttgtggagaaagtatggtctggagaactc
cgtaatgggctggctgtggtcaggcctcctggacaccatgctcaccgcagcaagatgaat
ggctactgcatgttcaacaacataggcattgcagcgcaatatgcccgacagaaactgggg
gtggagcgggtgcttattgttgactgggatgtgcaccatgggcaaggccttcagtacctc
tttgaggagaatcccagcgtcctttatttctccatccatcgctacgaaggagggaatttc
tggccccaccttccagaatctgacagtcacgcagtgggcagaggtcggggagagggctac
aacatcaacgtgccctggaaccagacaggaatgagggatgctgactacctctctgccttt
ttacatgtcctactaccagtggccttagagttccaaccccagatggtcctggttgctgcg
ggttttgatgccgtaattggtgaccctaagggggagatggctgccaccccagcatgcttt
gctcagctgacacacctgttaaagtcactggctgaaggcaagctgatcttatctctggag
ggtgggtataatctccagtctttggcagagggaacctgcacagtccttaagactcttcta
ggagatccctgcccgctgatggaatcacctttcctcccatgtagcagtgctctcagctca
gtgtctcagaccattgcagttcatagcaagtattggaagaacctgcggaggatcagtgcc
gatgtgcctcaggaggatggcaagctcagcgtagcttggccgtcagccaaccctgtctct
gtagctgataccctctccaggtcagcagctgaactgatacagcctcagcccccttcttgc
acagggctagtctatgatgagaaaatgatggagcactacaatatgtgggacagccatcat
ccagagctgcctcagagagtatccaggatcttccagcgccacagggagctgcatctgaca
gaaaggtgctgccggctcccagcccgtcttgcctctgaagaagaactacaaatgtgccac
agcctggcttatgtggagacattgaagtccacagccaccatgaagtcccgtgagctgcat
cgccagggagaccagtacaattctgtctacatctgtgccagctcctatgagtgtgcccgg
ttggcagctggatccgccttcagtgcagtagaggctgtgctctctgggaagactcaaaat
gctgtggccattgtccgcccgccaggacaccatgctgaatcagatactgcctgtggcttc
tgcttcttcaattcggtggctttggcagcacgccatgcccagcgcctggcccagaggccg
ttgagggttatgatactagactgggatgttcaccatggcaatggaacacagcacatattt
gaaaaggatcccagtgttttgtacatctccctccatcggtacgacaatggcactttcttc
cccacttctgaggatgcagattatgaccgagtgggtgtggggcctggtgaaggcttcacc
cttaacgtgccttggaactgttcccggatgggagactctgagtatctggcggccttccac
cagatcgtcatgcctgttggctatgagtttaacccagagctggtcctggtgtcggctggt
tttgatgctgctcgaggagacccactgggggggtgtctcgtgaccccggaatgctacgcc
cacatgacccacctcctcctgggtttggcaggagggaaagtagccgttgtcctagagggt
ggctacaacctagaatctatctcagagtccatgactatgtgcacgcgcagccttttgggg
gatcctccacccccactcggacgtctaaagcccccccatctgagtgccctgcagtcattg
gcccgtgtcgctgctgtgcaccgtaaatattgggcaagcctccgactggaagtgcctgct
accctgtgggagaagcccaggactcgggctgggaaggaaactcccgttccacatgaaatt
cctgatcaagctcctcaggagttgctccaaagccctgtagctcagtctgtggaagctata
ggtgatgccgtggccggcctgggctccctccagctagaagacaatctcatggaagagggc
gagacggcttcgagttctctctctcctgattctagtccggtgggtgaagaaactcaaccc
aaagttgatggatcccctaaggaagtggagccagtggaggatgcaccaagggaaggcgta
ttggcagagggcttccctgctgaagtaatggctcctgacaaaggagccagcttgcagcat
caccgccaagtcaacattgaggttgtcctgttggatgaagcagcaggaggctgttcttcc
tctgacaaacagcttggggaagatggggccgacagtgggctcttttatgccgtgactccc
ttaccttggtgcccccacctcagctcagtgctgcctgtgcctcctgtgggcttgaatgtg
ttggagccatgtgcagaatgtggtagtgagatggagaactgggtttgtctggtgtgctat
aaggtctattgtggacgctacattaatcaacatatgctggatcacaataaggactcaggg
catccactggtacttagctttgcagatctgtctgcttggtgctatgactgcgaagcctat
atccatcacccggtccttcttgaagccaagtgccaggctcacaagctgaagtttggagtg
gacatgcacctaccttcctaa
DBGET
integrated database retrieval system
