Cyprinodon variegatus (sheepshead minnow): 107099804
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Entry
107099804 CDS
T06110
Symbol
hdac6
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvg01009
]
107099804 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107099804 (hdac6)
04131 Membrane trafficking [BR:
cvg04131
]
107099804 (hdac6)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107099804 (hdac6)
Enzymes [BR:
cvg01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
107099804 (hdac6)
Protein phosphatases and associated proteins [BR:
cvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107099804 (hdac6)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
107099804 (hdac6)
Membrane trafficking [BR:
cvg04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107099804 (hdac6)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
107099804 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
DUF6761
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
107099804
NCBI-ProteinID:
XP_015253560
LinkDB
All DBs
Position
Unknown
AA seq
1104 aa
AA seq
DB search
MSAGSDPPGIKPSRRSPRLLPQSAAGEAGAQLCLPATPQADAEKQRGGNSLQEAKRRGRM
ERSREEELSGRLKTLDLSSRSAASGTGLVYSQIFTHHQNLWDLSHVESPSRVTSIMSELQ
RQELLDVCVSVEPREATEDELLLAHTKPYVDAMKETQKMTQAELQSLSERYDSVYLHPES
FQVCATAVGSVLQLVDRVLTSELRNGFAVIRPPGHHAQADQPNGFCVFNSVAIAARYAQR
RHSVSRXACTHTXQQRLLLVTLDLGRFSCVYFSILYFSLHRYEGGAFWPHLPESDCSFVG
SGRAEGRNINLPWNETGLSDADYIAAFQQVLLPVASEFQPQLVLVSAGFDAAAGDPKGEM
CVSPQCFHILTHMLMSLAEGRLVLALEGGYNLQATAEGVAACVRALLGGACPPLNPPTAP
SDSALHSISQTVSALYPYWASLQVLAGSVTEGRGARTAANHSGPKPASADTSFTKTTGLV
YDEKMMEHVNLWDRHHPEQPQRTFKIFSRHQQLGLVDRCHRIQARLATEEELAMCHSSQH
IRQMKATTEMKPRDLYKLGDNFTSIFLCNQSFQCAQMAAGSCFNAVDSILTGQVRNCVAI
VRPPGHHAERDVPCGFCLFNTAALTARYAQKNSQDPQLRILILDWDVHHGNGTQHMFEDD
DSVLYISLHRYDNGTFFPFSEDAAPDRVGVAKGSGYNVNVAWSGGRMGDSDYLAAFHHVV
MPIATEFNPGLVLVSAGFDAARGDPLGGYNVSPEGYAHLTHMMMSLAGGRVLVILEGGYN
LTSISDSMAMCTSVLLGDPPPSLVTPLPPPHHCAVATIREVIRQHLPYWRSLRIQVPESV
QEAVPSPKHRGKRSSQGRKSEKPPCVGAVSMTEHGLEQLMQGLASLDIHKTSANQDKVKP
SSTPPEAAAVKVEGDMKTENSQSAESMQPQSVTAAAKADQAGTDPEARAESGRGEEPLDG
SGAEPEEEGACGWSKPQVSLEMTCSAEMGGDTLYVVDPLPWCPHLDAVKPLPHSGIDVFQ
PCGDCGSDAENWICLTCYQVCCGRYVNEHMVTHGATLEHPMVLSFSDLSVWCYLCESYVH
HQVLFEAKNAAHFAKFGEEVPPWS
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctggatcagatcctcccggaatcaaaccatccagaaggtctcctcgcctgttg
ccacagtccgctgcaggtgaggctggagctcagctgtgtttacctgcgactcctcaggcc
gacgccgagaagcagagaggaggaaacagcctgcaggaggccaagaggagaggaaggatg
gagaggagcagagaggaggagctgagcggcaggctgaagacgctggatctgtccagcagg
tctgcagccagcgggaccggtctggtttactcacagatcttcacgcatcatcagaacctg
tgggatctaagccatgtagagagtcccagcagagtgacgtccatcatgtcggagctgcag
aggcaggagctgttggatgtctgcgtcagcgtggagcccagagaagctacagaggacgag
ctgctgctagctcacacgaaaccctacgtagacgccatgaaggagactcagaagatgacc
caggctgagctgcagagtctgtctgaaagatacgactcagtctacctccatccggagtcg
ttccaggtgtgcgcgacagcggttgggtcggtcctgcagctggtggaccgggttctgacc
tctgaactcaggaatggattcgctgtcatcagacctccaggtcaccacgctcaggcagac
cagcccaacgggttctgtgtgttcaacagcgtggcgatcgcagcccgatacgcccagaga
cgccactctgtcagcaggtaggcctgcactcacacttagcagcagcgcctcctgctggta
actctggacctgggccgtttttcctgtgtgtatttcagcatcctgtacttcagcctccac
cgctatgaggggggggccttctggcctcacctgccagagtcggactgcagcttcgtgggc
agcgggcgagctgaaggcaggaacatcaacctgccttggaacgagacgggtctgagtgac
gctgattacatcgctgcgttccagcaggtgctgctccccgtggcctctgagtttcagcct
cagctggttctggtctcagccggattcgacgctgcagccggagacccgaagggggagatg
tgtgtgagtcctcagtgtttccacatcctgacccacatgttgatgagtttggcggaaggg
cgactcgtcctggctctagagggggggtataacctgcaggccacagcagagggggtagca
gcctgtgtcagggctctgctgggcggagcctgtcctcctctgaacccgcccactgctccc
tctgacagcgccctgcactccatctcccagaccgtctccgctctgtacccatactgggcc
tcgctgcaggttctagctggatccgtgaccgaggggcgtggcgccagaaccgcagccaat
cacagtggcccaaagccagcctccgcggacacgtcttttaccaagaccacagggctggtt
tacgatgagaagatgatggagcatgtgaacctgtgggacagacatcacccagaacagcct
cagaggacctttaagatcttctctagacaccagcagctgggattggttgatcgttgccat
cggatacaggcacgcctggcaacagaggaggagctggccatgtgtcacagttcgcagcac
atccggcagatgaaggcgacgacggagatgaagcctcgagacctttacaagctaggagac
aacttcacctccatcttcctctgtaaccagagcttccagtgcgcccagatggctgctgga
agctgcttcaatgctgtggacagcatcctgactggccaggtgaggaactgcgtggccatc
gtccgtcctccgggtcaccacgccgaaagagatgttccctgcggtttctgcctcttcaac
acggcagcactcactgctcgctacgctcagaaaaactcccaggatcctcagctgcggatc
ctgatcctcgactgggacgttcaccacggcaacgggactcagcacatgtttgaagatgac
gacagcgttctttacatctcactccatcgctatgacaacgggacgttcttcccgttctct
gaagacgctgcccctgatagggtgggcgtggccaagggttcaggttacaatgtgaacgtg
gcgtggagcggaggacgaatgggcgactcagactacctagcagcctttcatcatgtcgtc
atgccgatcgccactgaatttaaccctggtctggttctggtgtccgctgggtttgacgca
gctcgaggagatcctctgggaggatataacgtgtctccagaaggatacgcccacctcaca
cacatgatgatgtcactggctgggggacgagtcctcgtcatcctggagggaggttataac
ctgacatcaatctctgactccatggcgatgtgcaccagcgtgttgctaggagaccctcct
ccatcgctggtgacgcccctcccccctcctcatcactgcgccgtggcaacaatcagggaa
gttatccgacagcacctcccctactggcggtccttgaggatccaggttccagagtctgtg
caggaagccgtgccctccccaaagcatcgtgggaaacgtagctctcaaggcaggaagtca
gaaaagccaccctgtgttggagcggtctctatgacggagcacggtctggagcagctcatg
cagggattggccagtctagacatccataaaacctctgccaatcaggacaaggtcaagcct
tcctccaccccaccagaagcggcagcagtgaaggtggaaggtgacatgaagactgagaac
agccaatcagcagagagcatgcagcctcagagcgtgacggcagcagcgaaggcggaccaa
gcagggactgaccctgaagcaagggcggagtcaggaagaggggaggagcctttggacggc
tcaggggcggagccagaggaagagggagcctgtggttggtccaagcctcaggtgtctctg
gagatgacatgcagcgctgaaatgggcggagacactctgtacgtggtggaccccctgccc
tggtgtcctcacctggatgctgtcaagcctctcccacattctggcatagacgtcttccag
ccgtgcggcgactgcggttccgacgccgagaactggatttgcctgacctgctaccaggtg
tgctgcggtcgctacgtcaatgagcacatggtgacacatggcgccacgttggaacacccg
atggtcctgagcttctcggatctgtccgtatggtgctacctgtgcgagtcctacgtccac
caccaggttctgttcgaggccaaaaacgctgctcacttcgccaagtttggagaggaggtt
ccaccgtggagctga
DBGET
integrated database retrieval system
