Crassostrea virginica (eastern oyster): 111115556
Help
Entry
111115556 CDS
T09197
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111115556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111115556
04121 Ubiquitin system [BR:
cvn04121
]
111115556
03036 Chromosome and associated proteins [BR:
cvn03036
]
111115556
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111115556
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111115556
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
111115556
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
111115556
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
111115556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_5
Ank_3
BRCT_2
BRCT
zf-RING_6
zf-RING_5
RTT107_BRCT_5
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
111115556
NCBI-ProteinID:
XP_022310047
EnsemblRapid:
LOC111115556
UniProt:
A0A8B8C2Z0
LinkDB
All DBs
Position
9:71641413..71666784
Genome browser
AA seq
675 aa
AA seq
DB search
MPTLNQTLKDLGNDLRCKACHSLAETPYVLGGCDHIYCSDCCQSLLDKSCVVCHIPVCVK
EAKVDKLFCSLLNEYKQLSHILDNPETFHPDDEIGRSVLTSKQKQQASAITESVPINTDK
KTKKQSTCTQSRGKRTKSIGTGDQTRRTQLLDDLEVHDRITGEVKDSVKAEKGEEKRTKE
QFKRKDISRKTTAAKSLRIREVYAGDLIINGDYSNVPSDQTGIESKLELAKPAKALVPSE
KKKARSSIGSNENVQRKTSRRSLPICVSTGEVSVTTSSKKTSRIPNSKQKNQSHLNSSLN
TASKGSPLNIDKKNAKGETALQVACIKGDLEKVKTLICSGANPNTQDNAGWTPLHEACHY
GHLAISEQLLQSGSLVDVPGTDNETPLHDAVRHLRIQCVKLLVQYGASINARNIKGLTSM
DLAGDNVELISALQTEAHSVTLPSSIQIDPLVYQSLCFLSTGLSRDQKILLQKCASKLQA
RIAEDFSSEVTHIVSTCNSSGLCPRTMKYLRGVLTGRWIVSMEWVKTCLEFGFKVCEEAF
EIPGTSSDPESKAALGGRINRQHRLPGLFDGCQFYFSGNFEYPTPEKEELISLVKLGGGH
VIQREPKPGQVPESDLTRPYHAPPDMATCCIYIVRDNTAECQPIKSPVMCSVKASWIMDC
VSQFKLLSVVNERSL
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgcctactctgaatcaaactttaaaagatttaggaaatgacttgcgttgcaaagcatgt
cacagccttgcagagactccatatgttcttgggggatgtgatcacatctactgcagtgac
tgctgtcagagtttgctggataagagctgtgttgtttgccatattcctgtttgtgtgaaa
gaggccaaagttgataagctgttctgcagtcttctgaatgaatataaacaactgtcccac
attctggacaatccggagacctttcatcctgatgatgaaataggaaggtctgtactgaca
tctaaacaaaagcagcaagcatctgctatcactgagtctgttccaatcaacacagataaa
aaaacaaagaaacaaagtacttgtacacagagtaggggaaaaagaactaaatcgattgga
acaggggaccagacaagaaggacacaactcttagacgacttagaagttcacgataggatc
actggtgaagtcaaggacagtgtcaaagcagagaaaggagaagagaaaaggacaaaagaa
caatttaaaagaaaagacattagtaggaaaactacagcagcaaaatctctaagaataagg
gaagtttatgctggtgacttgatcatcaatggagactattcaaatgtacccagtgaccaa
acagggatagagtcaaaactggagttggcaaaacctgcaaaagcacttgtaccctctgag
aagaaaaaagcaagaagtagtattggaagcaatgaaaatgttcaaaggaaaacgtccagg
cgaagtctgcccatatgtgtgagtacaggggaggtttctgtgacaacatcttccaaaaag
acttccagaatcccaaatagcaaacagaaaaaccagagtcacctaaactcttctttaaac
actgcaagtaaaggaagtcctcttaacattgacaagaaaaatgcaaagggtgaaacagct
ctccaagtagcttgcataaagggagatctagaaaaagtaaaaaccctgatttgttctggg
gctaatccaaatactcaagataatgcaggatggactccactgcatgaagcttgtcattat
ggccatttagcgatttcagagcaacttctacaatctgggtcactggtggatgttccgggc
acagataatgagaccccactacatgacgcagtccgacatctgaggatacagtgtgtcaaa
cttctagtccaatatggagcttccataaatgcaaggaacataaagggactgacatccatg
gatcttgcaggggacaacgtggagttaatctctgctctacagactgaggcacatagtgtg
actttgccttcctctattcagatcgaccctttagtctatcaaagcctgtgtttcctgagt
acaggtctttcccgtgaccagaagatattgcttcaaaagtgtgcatccaagcttcaggcc
agaatagcagaggacttctcttctgaggtaacccacattgtaagcacctgtaacagcagt
ggtctgtgtccccgcacaatgaaatatctacgaggcgtgctcactggtcgctggattgtc
agcatggagtgggtgaaaacctgcctggaatttggattcaaggtttgtgaagaggcattt
gagattccaggtaccagctcagatccagaatccaaggcagccctgggaggtcgcattaat
cgacagcaccggctaccaggactgtttgatggttgccagttctacttcagtggaaacttt
gaatacccaaccccagaaaaagaggaactgatcagccttgtcaaattaggaggaggtcat
gtgattcagcgagaaccaaagccaggtcaggtcccagagtctgacctcaccaggccttat
catgccccgccagacatggccacatgctgtatatatattgtgcgtgacaacacagcagag
tgccaaccaatcaaatcccctgttatgtgttcagtgaaagcctcatggattatggattgt
gttagtcagttcaaactattgtctgtagttaatgaaagaagtctgtaa
DBGET
integrated database retrieval system
