Dipodomys spectabilis (banner-tailed kangaroo rat): 122098772
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Entry
122098772 CDS
T07891
Symbol
Hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04613
Neutrophil extracellular trap formation
dsp05014
Amyotrophic lateral sclerosis
dsp05034
Alcoholism
dsp05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
122098772 (Hdac6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
122098772 (Hdac6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
122098772 (Hdac6)
09165 Substance dependence
05034 Alcoholism
122098772 (Hdac6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dsp01009
]
122098772 (Hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122098772 (Hdac6)
04131 Membrane trafficking [BR:
dsp04131
]
122098772 (Hdac6)
03036 Chromosome and associated proteins [BR:
dsp03036
]
122098772 (Hdac6)
Enzymes [BR:
dsp01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
122098772 (Hdac6)
Protein phosphatases and associated proteins [BR:
dsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122098772 (Hdac6)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
122098772 (Hdac6)
Membrane trafficking [BR:
dsp04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122098772 (Hdac6)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
122098772 (Hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
122098772
NCBI-ProteinID:
XP_042525130
LinkDB
All DBs
Position
Unknown
AA seq
1345 aa
AA seq
DB search
MTSTCQDSTASRQRKGRQNPQSPSHDVNAITKRTVKKGAVPRCTPNLSEIKKKGKMKKLS
QPVEEDLVMGLQGLDLNPEVKVMIGTGLVFDEQLNDFHCLWDDSYPENPERLHAIKEQLI
QEGLVDRCVCFPARVAEKEELMLVHSPEYIDLMETTQYMNEGELRILANTYDSVYLHPNS
FICACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQRDLMGGYCMFNHVAVAARYAQR
KHHIKRVLIVDWDVHHGQGTQFMFDQDPSVLYFSIHRYEQGRFWPHLQASNWSAIGCGQG
QGYNINIPWNQVGMRDADYIAAFLHILLPVASEFQPQLVLVAAGFDALQGDPKGEMAATP
AGFAQLTHLLMGMAGGKLILSLEGGYNLQSLARGVSASLHTLLGDPCPMLESPGAPCQSA
QASVSCTLEALEPFWEVLVNTVDSTEEDNESGDNWDERQEEGEGPLGATSLPVLTWPTLQ
HRTGLVYDQRMMSHCNLWDNHHPETPQRILRIMCHLEELGLAARCLHLPVRPATDAELLT
CHSAQYVERLRATETMKTRELHREGANFDSIYICPSTFTCAQLATGAVCRLVEAVLSGEV
LNGIALVRPPGHHAEHDAACGFCFFNSVAVAARHAQAIRGTALRILIVDWDIHHGNGTQH
IFENDPSVLYMSLHRYDRGTFFPMGDEGSSKHVGLAEGMGFTVNVAWNGPRMGDADYLAA
WHRLVLPIAYEFNPELVLVSAGFDAAQGDPLGGCQVSPECYAHLTHQLMGLANGHTILIL
EGGYNLTSISESMAACTHSLLGDPPPLLSMLRPPQPGALASITETIQAHRKYWRSLRVLK
VEDKDSPCTSKPITRKASHPTHLRLAKGVTMPEGKGVKASMRKVTSASSAKAPTAVHTKV
KTAKVTTCAQNKAQRDSWKSKLTWDTSENTVGGAMVVQAIFENSVGGTKMNQATSNETVG
EAMMDPITFEETDGEGAVVDKVICEKTEGTKVDQATSEDTVGGDTVDEATSKETVGGDMV
DQSTSEETVGGDMVDQATSEIVGGAKVDQATSEETMGGAKVDQATSKETMGGDMVDQVTC
KETMGGAKVDKVTCKETMGGAKVDEVTSKETVGEATSEATGEVILDQTNSEDALGGAKLI
QTPLDSDRDKEISLQQGTTFQLSPIQQIGNPRILEPGNEAQRALEDEDPEDEGLLGEAAG
GEPINNSQLAFGSGEAAAAVATITVAPDNDEDLFYAVTPMPWCPHLGAVCPIPAAGLNVN
QPCDTCGTMEENWVCLSCYKVYCSRYINGHMVSHYEASQHPLVLSCVDLSSWCYHCEAYV
HHQDVLHVKTVAHKNKFGEDMPSPN
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgacttccacctgccaggattccacagcctccaggcagcggaagggtaggcagaatccc
caatcgccttctcacgatgtgaacgccatcacgaagagaactgttaagaagggtgctgtg
ccccgctgtactcccaatctatcggagataaagaagaaaggaaagatgaagaagcttagc
caaccagttgaagaagacctagtcatggggctgcaagggctggatcttaaccctgaagtg
aaggtaatgattggtactggcttggtgtttgatgaacagctaaatgattttcattgcctc
tgggatgacagctaccctgaaaaccctgaaagactccatgccattaaggaacagcttatc
caggaaggccttgtggatcgttgtgtatgctttccggcccgggtcgcagaaaaggaagag
ctcatgttggttcacagcccagagtacattgacctcatggagacaacccagtacatgaat
gagggagaacttcgcatactggcaaacacctatgattcagtttatctacatccgaactct
tttatttgtgcctgtctggcctcaggctctgtccttagactagtagatgcggtcctggga
gctgagatccggaatggcatggctatcatcagacctccaggacaccatgctcagcgtgat
ctgatgggtgggtattgcatgttcaaccatgtagctgtagctgctcgttatgctcaaagg
aagcaccacattaagagggtccttatcgtggactgggacgttcatcatggccaaggaaca
cagttcatgtttgaccaggatccgagtgttttatacttctccatccaccgctatgagcag
ggtcggttctggccccacctccaggcctctaactggtctgccataggttgtggccaaggg
caaggatacaacatcaatataccttggaatcaggtggggatgcgggatgcggactacatt
gctgcttttctccacatcctgttgcctgttgcttctgagtttcagcctcaactggtcctg
gtagctgctggatttgatgccctccaaggggaccccaagggcgagatggctgccacccct
gcagggtttgcccagttaacccatctgctcatgggtatggcaggaggcaagctaattctg
tctctggagggtggatacaacctccagtctctggctaggggtgtcagtgcatctctccat
acccttctgggagacccttgccctatgctagagtcccctggtgcaccatgtcaaagtgct
caggcttcggtctcctgtactctggaagccctagaaccattctgggaagtccttgtgaat
acagttgatagtacggaggaggacaatgagtctggagacaactgggacgagagacaagag
gaaggggaaggacccttgggggccacttcactgccagtcctgacatggcccacgctacag
catcgtacaggattggtctatgaccaaagaatgatgagtcactgcaacctgtgggacaac
caccaccctgagacaccccagcgtattttgcggatcatgtgccacttagaggaactaggg
cttgcagcacgctgtctccacctgcctgtgcggcctgccactgatgccgagctccttacc
tgccacagtgcccagtatgtggagcgtctccgggctacagagacaatgaaaacccgggaa
ctgcaccgcgagggtgccaactttgactccatctacatctgccccagcacattcacctgt
gctcagctagctacaggtgctgtctgccgcctggtggaagctgtactatcaggagaggtt
ttaaacggcattgctctggtgcgcccccctggacaccatgcagagcacgatgctgcttgt
ggcttctgtttttttaattctgtggctgtggctgctcgccatgcccaagccattaggggg
actgccttaaggatcctaattgtggattgggacatccatcatgggaatggaactcagcac
atctttgagaatgaccccagtgtgctttatatgtccctgcaccgctatgatcgtggcact
ttcttccccatgggggatgaggggtccagcaaacacgtaggtctggctgagggcatgggc
ttcactgtcaatgtggcctggaatgggccccgtatgggtgatgctgactacctggctgca
tggcatcgacttgtgcttccaattgcatacgagtttaacccagaactggtgcttgtatct
gctggttttgatgctgcacagggtgacccactgggtggctgccaggtgtcaccggaatgt
tatgcccatctcactcaccagctgatgggccttgccaatggccacactatccttatccta
gagggtggctacaacctgacatccatctcagagtcaatggctgcctgtacccattccctc
cttggagatccgccacccctgttatcgatgcttcggccaccacaaccaggggccctggcc
tcaattacggagaccatccaagcccatcgcaaatactggcgcagcctgagggtcctgaag
gtagaagacaaggattcaccctgcacttccaaacccatcaccaggaaggcatcccatcca
acccatcttaggttggctaagggggtaaccatgccagaagggaagggtgtaaaagcaagc
atgaggaaggttacctcagcgtcatctgcaaaagcacctactgcagttcacaccaaagtg
aagacagccaaagtgaccacatgtgctcaaaacaaggctcagagagatagttggaaatca
aaactaacctgggacacctctgagaacactgtgggaggagccatggtggtccaggccatc
ttcgagaatagtgttggaggaaccaagatgaaccaggcgacctccaatgagactgtggga
gaagccatgatggacccgatcacctttgaggagactgatggagaaggagccgtggtggac
aaggtcatctgtgagaagactgaaggaaccaaggtagaccaagccacctctgaggacact
gtgggaggagacacggtggatgaggccacttccaaggagactgtgggaggagacatggtg
gaccaatccacctcagaggagactgtgggaggagacatggtggaccaggccacctctgag
attgtgggaggagccaaggtggaccaggccacctctgaggaaacaatgggaggagccaag
gtggaccaggccacctccaaggagactatgggaggagacatggtggatcaggtcacctgc
aaggagaccatgggaggagccaaggtggacaaggtcacctgcaaggagaccatgggagga
gccaaggtggacgaggtcacctccaaagagactgtaggagaagccacctcagaggctaca
ggggaagtcatactagaccagaccaactcagaggatgctctgggaggagccaagctgatc
caaactcctctagactcagacagagataaggagatctcacttcagcagggaaccacattc
cagctatcccccattcagcagattgggaatcccagaattttagaaccaggcaatgaagct
cagagagccctggaagatgaagacccagaagatgaaggcctactgggagaagcagctgga
ggtgagcctattaataactctcagctggcatttggatctggggaagctgctgctgctgtt
gctactatcactgttgctcctgacaatgatgaggacttattttatgctgtaacaccaatg
ccttggtgcccccatttgggggcagtgtgccccatacctgcagcaggactgaacgtaaac
caaccttgtgatacctgtggaactatggaggagaactgggtgtgtcttagttgctataag
gtctactgcagtcgttatataaatggtcacatggtcagccattacgaagcttctcaacac
ccattagtcctcagctgtgtagacctctcttcctggtgttaccattgtgaggcctatgtc
caccaccaggatgtcctccatgtgaagactgtggctcacaagaacaaatttggagaggac
atgccctcccccaattaa
DBGET
integrated database retrieval system
