Eucalyptus grandis (rose gum): 104440745
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Entry
104440745 CDS
T03547
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104440745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104440745
04121 Ubiquitin system [BR:
egr04121
]
104440745
03036 Chromosome and associated proteins [BR:
egr03036
]
104440745
03400 DNA repair and recombination proteins [BR:
egr03400
]
104440745
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104440745
Ubiquitin system [BR:
egr04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
104440745
Chromosome and associated proteins [BR:
egr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104440745
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104440745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-HC5HC2H
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_6
zf-C3HC4_4
zf-RING_5
zf-RING_10
RTT107_BRCT_5
zf-Nse
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
104440745
NCBI-ProteinID:
XP_010052004
LinkDB
All DBs
Position
4:complement(5182412..5189366)
Genome browser
AA seq
1009 aa
AA seq
DB search
MADPIPSQLEMMGRELKCPICLSLLNSAASLLCNHVFCNSCIMKSMKSGSNCPVCKVPYR
RREVRPAPHMDSLVSIYKNIEVASGINIFVSQNAAPDKLSDGENQLEHCDVTSNGDVEVS
GHEVSEGKRTSKKKVPRKTKEESNTIISSPNCVKPSFPKKKRVQVPQYPSAESSLCPPNP
KAGLCETKDNENTLASAKQKLALNEKGEQSFLPFFWLREEEDAEKLTQSSDNEQLTGISP
PDVPSFSDMKDSDDESPFKLTTEGNNNGNPEARELYDSEMFEWTQRPCSPELCSSPIKVQ
VTGSKKDFKEASQQKIVIQTIRNLDNRIDIDDVPSPDFPSASMTENNHMRKFTSKKRSRN
RSGKSQMNSMTGNAKHSPAARLSSNETFETCHEQPSWHSDENILMEKNKLKKSKKSVSVI
GQIKTTDGDVSGEIPGKGCSVTEVAETPASKQDNDDNTSSFKTGNNHNLDLPFQKDHLAM
LNERKPISAEERINFEGPAIQDLTDENLVHNSSLSTFPLVNLTESSTVRNKDDNSEGMKS
GKLLTDDRGLRLKESKKCNSLVISDAGVDDGNPEVGGNAQVEEAQTNHDMRVASELPIAE
KLQDSDEMVLRKCGTIPRDVQCAFCQSSECSEASGEMVHYSNGEPVPADYNGGSRIIHSH
KNCTEWAPNVYFVDGKAINLEAEVLRSRRIKCCCCGIKGAALGCYEKSCRKSFHVTCAMK
IAQCRWDTVNFVLLCPLHFSSRLPIEIPRPQEMKSSSKEERSQLVHDGNDEKHQHASSSK
RIYCGSHDKIVLCCSALTKAEREAVSQFGRASRATVVQKWNPTVTHVIASTDENGACKRT
FKVLMGILEGKWILSVEWIKACMEAMEHIHEERYEINADIHGMRNGPQLGRQRVINMQPK
LFDGLKFYFMGDFDPSYKGYLQDLVVAAGGTVLHRKPIPCDELAPLPPSIASTFIIYSLE
MPDKCGLSRDMIIKRRLSSAEALARSTGAKVASNSWLLDSIAACKLGDL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccgatcccgagtcagctggaaatgatgggcagggagctcaagtgtcctatc
tgcttgagcctgttgaattctgcagcttcgctcctatgtaaccacgtgttctgcaactca
tgcattatgaaatcaatgaaatctggctctaattgtccggtttgtaaggtgccctatcgt
cgtagagaggttcgcccagctccacacatggacagcttggtaagcatatacaagaacatt
gaagtggcttcaggaataaacatttttgtcagccaaaatgcggcacccgataaattatca
gatggggagaaccaactagagcattgtgatgttacgagtaatggagatgttgaagtgtct
ggtcatgaagtatcagagggaaaaaggacatccaaaaagaaagtaccaagaaaaacaaaa
gaagagtccaacacaatcatatccagtcctaattgtgtaaaaccttcctttccgaaaaag
aagagggtccaggtgccgcaatatccttctgctgaatcttcgctatgtcctccaaatcca
aaagctggattatgtgaaactaaagacaatgagaacactttggcttcagcgaagcagaaa
ctagcactgaatgaaaagggagagcagtcatttttgccctttttctggttgagggaggaa
gaagatgctgagaagctgactcaatcttccgacaatgaacagctcacaggcatatcacct
cctgatgttccttctttcagtgatatgaaggactcagatgatgagtctccctttaagttg
actactgagggaaacaataatggtaatcctgaggccagagaactctacgacagtgagatg
tttgaatggacgcaaagaccttgctcccctgaactttgttcaagtcccattaaagttcag
gtaactggtagtaagaaagatttcaaggaagcctcacaacaaaaaattgttattcagaca
attagaaatttggataatcgaattgatattgatgatgtgccatccccggatttcccttct
gcgtcaatgactgagaataatcatatgaggaaatttacatccaaaaagagaagcagaaat
aggagtggaaagtcccagatgaactctatgactggcaatgccaagcacagtcctgcagct
cgtcttagttcaaatgaaacatttgaaacctgtcatgaacagccatcatggcatagtgat
gaaaatattttgatggaaaaaaacaaattgaaaaagagtaagaaatcggtttctgttatt
ggtcaaattaagacaacagatggagatgtttctggtgagattccaggcaagggctgcagt
gtcactgaagtagctgaaactccagcttcgaaacaggacaatgatgataatactagctct
ttcaagactggaaataaccacaaccttgaccttccattccagaaagatcatcttgcaatg
ttgaatgaaagaaagccaatatctgcagaagagagaatcaattttgaagggcccgccatc
caagacctaaccgacgaaaacttggtgcacaactcatccctttcaacttttccgttggtg
aatctcacagagtcgtctacagtgagaaataaggatgacaacagcgagggaatgaagtct
ggaaagttgctaacagatgatcgaggattgagactaaaggagagtaagaaatgtaattct
ttggtaatctcagatgctggggtggatgatgggaatccagaggttggtggtaatgcgcaa
gttgaggaagctcaaacaaatcatgacatgagagttgcaagtgagcttccaatagctgag
aagctacaagattcagatgaaatggttttgcgaaaatgtgggaccattccccgggacgtc
cagtgtgctttctgccagtcatcagaatgctcagaggcttcaggagagatggtccactac
agtaatggggagcctgttcctgcagattacaatggaggatctaggatcatacattcgcac
aagaattgcactgaatgggctcctaacgtctattttgtggatggtaaagctattaatctt
gaagctgaagtactcaggagccgaagaataaaatgttgctgctgtggaatcaaaggggca
gctcttggatgctatgagaaaagttgtcgcaagagttttcatgtcacttgtgccatgaag
atcgcccaatgtagatgggatactgttaattttgttctattgtgcccgcttcacttttct
tctagattaccaattgaaattcccagacctcaagagatgaagagttcttcaaaagaagag
cgatcacaacttgttcatgatggaaatgacgagaagcatcagcatgcctcaagctcgaag
cggatctattgtggatctcacgacaaaatagttctgtgctgttcagctttaacaaaagct
gagagggaagcggtttctcaatttgggagggcatccagagcaacagtggtgcaaaaatgg
aatccaactgtgacccatgtgattgcatcaacagatgaaaatggagcttgcaaaaggacg
ttcaaagtcttgatgggtatcctggagggcaagtggatactgagtgttgaatggataaaa
gcttgcatggaagcaatggaacatatacatgaggagagatatgaaattaatgctgacatt
catggaatgaggaacggtcctcaacttggaagacaaagagtcattaacatgcaaccaaaa
ctatttgatgggcttaagttctatttcatgggagattttgatccttcatacaaagggtac
ctacaagatcttgtagttgctgccggcggcaccgtgcttcacagaaagcccattccttgc
gatgagctagcccccttacctccatccattgcttcaaccttcataatatacagccttgag
atgccagacaagtgtggtctgagcagggatatgatcatcaagcgcaggttgtctagtgca
gaggccctcgctagatcaacaggagcaaaagtggcaagcaactcatggcttttggattct
attgcagcatgcaagttaggagatctctga
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