Ficedula albicollis (collared flycatcher): 101808348
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Entry
101808348 CDS
T02815
Symbol
BARD1
Name
(RefSeq) BRCA1 associated RING domain 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101808348 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101808348 (BARD1)
04121 Ubiquitin system [BR:
fab04121
]
101808348 (BARD1)
03036 Chromosome and associated proteins [BR:
fab03036
]
101808348 (BARD1)
03400 DNA repair and recombination proteins [BR:
fab03400
]
101808348 (BARD1)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
101808348 (BARD1)
Ubiquitin system [BR:
fab04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
101808348 (BARD1)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
101808348 (BARD1)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
101808348 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
NIBRIN_BRCT_II
RTT107_BRCT_5
zf-RING_5
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
101808348
NCBI-ProteinID:
XP_005049103
LinkDB
All DBs
Position
7:2680720..2743813
Genome browser
AA seq
907 aa
AA seq
DB search
MAGAIFVLILGDAAPTSLLIAAGRPFWNEAFTRESNPRVLGVSQGNGSAPTGCKAQSSTP
TISPASTVMQLLQFEATNSMRLKEAKRVLHFGHNNPXYLLKKTSACKSGRLGCGLGRCRT
HRLREKPLWKPEITAGAERLESRESWKALGVLVAAAGHEPVPPCSAHSAGVLREPVSLGQ
CEHVFCLCCVGDCVGTECPVCHMPAWVQDAQINRQLDTMIQLCSKLRQLLGTDASDSAED
TCTPTDSDMEKKSKKEQIKMWFSPRSRKIRCVVNRSHAKTKSNDLGQDKDTSVYEFFPSP
PHEQPSKPTKKPTQKQVKRMKKKHLADVNRKWSLEKPEQKRDEEKTPKGKCLTICSQPVV
LCTQEPESPEQTSQQESVKEADSCSNTENMEVPPQVESPEKKDNSEVVCSARDSKEKNCA
AETLLSIANEVTPLKRGREQSRLQGAPQSKRARRSERGIPGKSGRQANGQEESLQGSPIS
PAIEQTPVQTSSSASKLTDTGMKTRRSAALQAINSPSLSESPSTPSTSKTCSQVATPLSP
SVLKSPGVNPIARRNFKGETLLHVASIKGDLAAVEQLLKNGADPNVKDNAGWTPLHEACN
HGHREVVELLLQHRALVNTTGYQNDSPLHDAARNGHQAIVELLLLHGAAREAVNIFGLRP
VDYAESEKMKSVLMLPAKNESFSLNQPSEALSSSQPRNGPLGILGSSLSAEQQKLLNKLA
TVLKAQRCTEFNSRVTHLVIPDVPMPTTVKCMMALLTGCWVLKFEWVQACLQSSAREQEE
KYEVQGGPRRGRLNREQLLPKLFDGCYFYFLGPFKQHQKSDLLELVKAAGGQVLVRQPKP
DSDVTQTINTVAYHAEPSSDQRLCTQYVIYDVASKFQPDKIRQGKVWMAPSSWLIDCVMA
FQLLPVK
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggccatctttgtgctcatcctgggggatgcagcccccacttcattgctcatt
gctgctggaagacccttctggaacgaggctttcacgagggaaagcaatcctagggtgctg
ggggtgagccaaggaaatggcagcgctcccacgggctgtaaggctcaaagcagcaccccc
accatctccccagcctccacagtcatgcagctgcttcagtttgaagcaaccaacagcatg
aggctcaaggaggccaagcgggtcctgcactttggccacaacaacccctngtacctccta
aaaaaaacatcagcctgcaaaagtgggagactgggctgtggcctggggcgctgcaggaca
cacaggctgagggaaaaaccgctttggaaacccgaaataacggccggggcagagaggctg
gaaagccgggaaagctggaaagccctgggggtgctggtggcagcagctggacacgagcca
gttcctccttgctctgcccacagcgccggcgtgctgcgggagcccgtgtcgctggggcag
tgcgagcacgtcttctgcctgtgctgtgtgggtgactgtgttggcaccgagtgccccgtg
tgccacatgccagcctgggtgcaggacgcgcagatcaaccggcagctggataccatgatc
cagctctgcagcaagctgcggcagctcctgggcaccgacgcctccgattcagcagaagat
acatgcacaccaactgactcagacatggaaaaaaagagcaagaaggagcagataaaaatg
tggttcagcccaagaagcaggaagattcgatgtgtggtgaacaggagccatgctaagact
aaaagcaatgaccttggccaggacaaggatacatcagtttatgagttctttccttcccct
cctcatgaacagccctccaagccaacaaaaaaaccaacccagaagcaggttaagaggatg
aagaagaaacatctagcagatgttaacaggaagtggagcctagagaaacctgagcagaaa
agagatgaggagaagactcccaagggaaagtgtctaaccatctgcagtcaaccagtagtg
ctgtgcactcaggaaccagagagccctgagcaaacatctcagcaggagtctgtaaaggaa
gctgactcctgcagtaatacagaaaatatggaagttccaccacaggtagaatccccagag
aagaaagataacagtgaggttgtgtgctctgcacgagatagcaaggaaaaaaactgtgct
gcagagacattgctgtcaatagcaaatgaagttacacctttgaaacgtggaagggagcag
tccagacttcagggtgctcctcagtccaaaagagcaaggagaagtgagcggggcattcct
gggaagtcaggcaggcaggccaatggccaagaggagtcactgcagggctcccccatctcc
ccagccattgaacagacaccagttcagacttcttcctctgcatccaaactcactgacact
ggaatgaagacaaggagatctgcagcccttcaagcaataaacagtccttcactttcagaa
tctccctctaccccatccacttctaaaacatgcagtcaagtagcaacaccactcagccct
tctgtgttgaaatcccctggggtcaacccaattgccagaagaaatttcaagggagagact
ttgctgcatgttgcttccatcaagggtgacttagcagctgtggagcagctgctgaaaaac
ggggcagatcccaatgtcaaagataacgcaggctggacaccactgcacgaggcgtgcaac
cacgggcacagggaggtggtggagctgctgctgcagcaccgggcgctggtgaacaccacg
ggctaccagaacgactccccgctgcacgacgccgccaggaacggccaccaggccatcgtg
gagctgctgctgctgcacggcgccgcccgggaggcagttaatatatttggtctgcggcct
gtggactatgcagaaagtgaaaagatgaaatctgtgctaatgttaccagcgaagaatgaa
tcattttcacttaaccaaccctctgaggcactgagctccagccagccaagaaatggaccc
cttggtatactggggagcagtcttagtgcagagcagcagaaattgctgaacaaattagca
acagtcttgaaggcccagaggtgcactgaatttaacagcagagtaactcatcttgttatc
cctgatgttccaatgccaactactgtgaaatgcatgatggctcttctgactggatgttgg
gtcctcaagtttgaatgggtccaagcctgtctgcagagctcagcccgagaacaagaagag
aagtacgaagtgcaaggtggccctcggcgagggaggctcaacagggagcagctgctgcct
aagttgtttgatgggtgctacttctattttttgggacctttcaaacagcaccagaagagt
gatctgctggagctggtgaaggcagcaggtggccaggtcctggtcaggcagcccaaacca
gacagtgatgtgacacagaccatcaacacggtggcctaccatgcagagcccagctctgac
cagaggctgtgcactcagtatgtcatctatgacgtggcttccaagttccagccagacaaa
atccgccagggcaaggtgtggatggccccctccagctggctcatcgactgtgtgatggca
tttcagctcctgcctgtcaagtga
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