Gossypium hirsutum (upland cotton): 107942613
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Entry
107942613 CDS
T04793
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107942613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107942613
04121 Ubiquitin system [BR:
ghi04121
]
107942613
03036 Chromosome and associated proteins [BR:
ghi03036
]
107942613
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107942613
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107942613
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
107942613
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107942613
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107942613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_6
zf-RING_UBOX
zf-HC5HC2H_2
zf-C3HC4_4
RTT107_BRCT_5
zf-C3HC4_3
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
107942613
NCBI-ProteinID:
XP_016731798
UniProt:
A0A1U8N1Y5
LinkDB
All DBs
Position
A01:38908632..38914347
Genome browser
AA seq
1020 aa
AA seq
DB search
MKRMKKGGHGYGRKDNSFPKMGDPSHLEKMGRELKCPICLSLLNSAVSLTCNHVFCNVCI
LKSMKSGSDCPVCKVPCRRREVRPAPHMDNLVSIYKSMEVASGFNIFVTQDVPLDTSADS
RKRVKNDLNCCERVDNRGANKGRGSREAKSTETSDPISVKPSFPTNKRVQVPQYPLSETP
MLPEKNRGELIEIIKDESKMSSDILKENNLGEKGEQILSPFFWLREEDVERPSQLSDGDQ
CVYVSPPGLPSFSDMKDSDDEGFSKEEVHGNRDHLNLFDNEMFEWTQGACSPELLSSPVK
MQVADTYEPASQGANTAEPSNNGTCMITGHDASEEMLPNIESFRIQCVSSNKIRSCKSKE
LGKKQRKTAQKNIADRTSSHISGDHVNLGKGSEDFNKKQKDDCSSSSYLAKTRKNCKVAG
LDHHVTEPMASHFSAKTPKQEDTPLAAIVGMGKCGDENENLRMVKHCRKITAQCEKKSCS
KLKKQKLSLAKVDTPKEVSTICEQKNEYMIQQKSSLPVPLAHDNAAEQFRKGLSKHTREV
KLVPTLKSEKNSGCKKKIKVSLSDDMKSGLAEDQQQRGGNANISLERLSEKVHGRTTVGI
SESSTAKKLPPANGVALHKCETITIKIQCAFCLSMEETEASGEMVHYYEGSSVPLDYNGG
SKVIHSHKNCTEWAPNVYFENDKAINLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKSF
HVPCAKLVSQCRWDTDNFVILCPLHASSKLPNEKSESQGIRKRCNLRGQLPIRHNEIPIN
DEVSVQKKWNPCESRNKLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTD
ENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELQYEITIDVHGIRDGPRLGRL
RLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGAPLLGSSAF
PIFIIYSVELPVKCDPSKKHMILSRRQLNAEALASSTGAKAVSNSWVLSSISACKLSLGE
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgaaaaagggcggccacggctatggaaggaaggacaattcatttccaaaa
atgggggatccaagtcacctcgagaaaatgggcagggagctgaaatgccccatttgcttg
agtcttttgaactctgccgtttcgctcacttgcaaccatgtattctgcaatgtctgtatt
ttgaaatcaatgaaatcgggttccgattgtcccgtctgtaaagtaccctgccggcgtcga
gaggttcgtccagcccctcacatggataacttggttagcatctacaaaagcatggaagtt
gcttcaggtttcaatatatttgtcactcaggacgtgcctctggacacttcagcagattcc
cgaaagcgagttaaaaatgatctcaattgttgtgaaagagtggataatcggggagcaaac
aaaggaagaggatcaagggaggctaaatcaacggaaacttctgatcccatttctgtgaag
ccttcttttccaactaacaaaagggttcaggtgccacaatatcccctttcagaaacaccc
atgctgcctgaaaagaatcgaggtgaattgattgaaatcatcaaggatgaatctaaaatg
agttcagatattctgaaggagaacaatctaggagaaaagggggaacaaatactttcgccc
tttttctggttgagggaggaggatgtagaaaggccaagtcagcttagtgatggggatcaa
tgtgtgtacgtatcaccacctggacttccttctttcagtgatatgaaggattctgatgat
gaaggcttttctaaggaggaggtgcatggaaaccgcgaccatctgaatctttttgataat
gaaatgtttgaatggacacagggagcttgttctccagaacttctttcaagtcctgttaaa
atgcaggttgcagacacctatgaacctgcatcacagggtgcaaatacagctgagccctct
aataatggcacatgcatgataacaggacatgatgcttcggaggagatgctgcctaatata
gaatctttcagaatccaatgtgttagtagtaataagatcaggagttgtaaatccaaggag
ttgggtaagaaacagagaaagactgcccaaaagaatatagctgacagaactagcagtcat
atttctggagatcatgtcaatttgggaaaagggtctgaagattttaataaaaaacaaaaa
gacgactgtagtagttcttcatatttggctaagactaggaaaaattgtaaggtggctggt
ttggatcaccatgtaactgaacccatggcatcacatttttctgccaaaactcctaaacag
gaagacacaccattggctgccatagtgggtatggggaaatgtggtgatgaaaatgagaat
ttgaggatggtaaaacattgcaggaagatcactgcccagtgcgaaaagaaatcttgttca
aagttgaagaaacaaaagctaagtttggctaaggttgatacccctaaagaagtttcaacc
atttgtgagcagaaaaatgaatatatgattcaacagaagtcttcacttcccgttccctta
gctcatgacaatgctgctgagcagttcagaaaaggattgagtaaacatactagagaagta
aagttggttccgactttgaaaagtgaaaaaaactcgggttgtaagaaaaagattaaagtt
tctttaagtgatgacatgaaaagtgggttggctgaagaccaacagcagcggggaggaaat
gctaatatttctctagagagactaagtgaaaaggttcatgggagaaccactgttggaatt
tcagagagctcaacagcaaagaagttgcctccagctaatggagtggcactgcataaatgt
gagaccattacaattaaaatacaatgtgctttctgtctttctatggaagaaactgaggct
tctggagagatggttcattactatgaaggcagttctgttcctctagattacaatggtggc
tctaaggtcatacattcacacaagaactgcactgaatgggcccctaatgtttattttgaa
aatgacaaggcaatcaaccttgaggctgaactctccagaagtcgaaaaataaaatgctcc
tgttgtggactcaaaggtgcagcattgggctgttatgaaaaaagttgtcgaaagagtttc
catgttccctgtgcaaaactagtctcacaatgccggtgggatactgataactttgtaatt
ttatgccctctccatgcctcctctaagttgcctaacgaaaagtcagagtcccaaggaatc
cgaaaaagatgcaatttaagaggacagttgccgatacgccacaatgaaattcctataaat
gatgaagttagtgtgcagaagaaatggaatccttgtgaatcacgcaacaaattggttctc
tgttgctcaggtctcacagttgaggaaaaggaaatcatgtctgaatttgagaaattagct
ggtgtgacagtgttgaagagatgggattcaaatattacccatatcattgcatccaccgat
gaaaatggagcatgcaaaagaacccttaaaattttaatgggtatcttggaggggaagtgg
atactgaatataaagtgggtcaaagcttgcatcaaagccatgaaacttgttgatgagttg
caatatgaaataactattgatgttcatggaatcagggatggtccccgacttggaaggctg
agactccagaataagcaaccaaagctttttgatgggtgtaagttctatataatgggggat
tttgaaccttcctataagggagatctacaggatgttttaatcgcagcaggaggtaccatt
ctgcatagaaaacccatatcaggtgatccgggagccccattattgggttcctctgcattt
ccaatcttcataatttatagcgtcgagttgcctgtcaagtgtgaccccagcaagaagcac
atgattttaagccgcaggcaattaaatgcggaagctctggcaagttcaacaggagccaaa
gcagtaagcaattcttgggttttgagctccatatctgcatgcaaattgagtcttggcgaa
taa
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