Glycine soja (wild soybean): 114406945
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Entry
114406945 CDS
T06057
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114406945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114406945
04121 Ubiquitin system [BR:
gsj04121
]
114406945
03036 Chromosome and associated proteins [BR:
gsj03036
]
114406945
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114406945
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
114406945
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
114406945
Chromosome and associated proteins [BR:
gsj03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
114406945
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
114406945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-RING_6
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-HC5HC2H_2
zf-C3HC4_2
zf-RING_2
PTCB-BRCT
RTT107_BRCT_5
zf-RING_5
zf-C3HC4_4
zf-Nse
Motif
Other DBs
NCBI-GeneID:
114406945
NCBI-ProteinID:
XP_028225629
LinkDB
All DBs
Position
3:39893240..39898789
Genome browser
AA seq
678 aa
AA seq
DB search
MDDSGSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITAGSE
CAVCKTTYAQTDVRHIPFVENVVAIYRSLDATFCASLFQSRSSGDGRVLEPCQTILNSTS
SSLKTGKLPRNLTNLNEVGVGQTFKSKSVVHDKAEELELSCGRGKPNPMQSSLMGLGGRE
QCGVMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPGRLENSSLNRASTGNGN
LKERMGQLRSESSASETEGLARDLKRQKILDFKPGKDPGAPLPTNASIYLCPIGRICSFC
QSSKISEVTGPMLHYANGNLVTGDAAMKPNVVPVHRICIDWAPQVYFDGEVVKNLKAEVA
RGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPC
EKIRSKKQATQKHPTLSHLPSHHSNPIEASHDDDEKLVFCGSALSNEEKVLLINYASKVG
ATVTKFWTSNVTHVIAATDAHGACSRTLKVLMAILNGRWVLKMDWIKACMEEVNPVEEEP
YEINLDNQGCQGGPKAGRLGALANEPKLFNGLKFYFSGDYVSTYKEDLEELIEVGGGSVL
RSKEELESQRHECKGDSSQLLIVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIG
HTWILESIAACKLQPFVN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggatgattctggaagtaaaactaaactactgaatccatggatgctccactttcagaaa
ctcgctctcgaactcaagtgccctctctgtttgagtttgttcaagaggccggtattactt
ccatgcaaccacttgttctgcaattcatgtttggctgattgcataacggctgggtctgaa
tgcgctgtttgcaagacaacgtatgctcaaacagatgtaaggcacataccttttgtggaa
aacgtggtggcaatatatagaagcttggatgccactttttgtgctagtttgtttcagtcg
cgttcttctggtgatgggagggttttggagccgtgccaaacaattcttaattcaacttct
agtagtttaaaaactggcaagcttcctcggaacttaactaatttgaatgaggttggggtt
ggccaaactttcaaatccaagagtgtggtgcatgataaagctgaggagcttgagttgtct
tgtgggagagggaagcccaatccaatgcaatcttccctgatgggacttgggggccgagaa
cagtgtggagttatggaaatggatgtgaatcaagtaacacaatcagcacctgatagcccg
cccttttgtgataccaaaggttcagataatgactgcagtgatcaagatagtgagcatcca
ttacctcctggcagattggaaaattcttcactaaacagagcaagcacaggaaatggaaat
ttgaaagaaagaatgggacagcttaggtctgaaagttcggcctctgaaactgagggtctg
gcaagggatctcaagaggcagaagattctggactttaaacctggaaaggaccctggtgca
ccattgcccacaaatgcttcaatttacttgtgtccaattggaaggatctgctcattttgc
caatcctctaaaatctcagaggttactggaccaatgctgcattatgcaaatgggaactta
gttaccggagatgcagccatgaaaccaaatgttgtacctgtgcatagaatttgcattgac
tgggcaccacaagtgtactttgatggtgaagtggttaagaatttgaaggcagaggtggca
aggggagcaaaacttaaatgcagtaaatgtaatctaaagggagctgctcttggctgctat
gtcaaatcctgtagaagaacttatcatgttccttgtgcaatggacatctcagattgccgt
tgggatcatgaggattttctcttgctctgtcctgtccattcaaatgtcaaatttccatgt
gagaaaattaggtccaagaaacaggcaacacagaagcatcccactttgtctcatctgcca
tctcaccactcaaatcctattgaagcttcccatgatgatgatgaaaaattagtattttgt
ggatctgctctatcaaatgaagaaaaggtacttttgatcaattatgcaagcaaggttggt
gctactgtgaccaagttttggacctcaaatgtcactcatgtaattgcagcaactgatgca
catggagcatgctccaggacattgaaagttctgatggcaattctaaatggacgatgggtt
ctaaaaatggattggataaaagcatgcatggaagaggtaaatcctgtggaggaagaacca
tatgaaattaatcttgacaaccaaggatgtcaaggtggcccaaaagctggcagacttggg
gcattggccaatgagccaaagctattcaatggcttaaagttttatttttctggggattat
gtgtcaacttataaggaagatctcgaagaattaattgaagtgggaggaggtagtgttttg
agaagcaaggaagaattggaatcacaaagacatgaatgcaaaggagattcttcacagttg
ctgattgtttacaacctggatcctcctcaaggatgcaaattgggggaggaagtttcaatt
ctttggcaaaggctaaacgatgcagaggatttagctgctaacactttacaagtcattggt
cacacatggattcttgaatcaattgctgcatgtaaattgcagccttttgttaactaa
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