Hippoglossus hippoglossus (Atlantic halibut): 117755166
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Entry
117755166 CDS
T07778
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117755166 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117755166 (bard1)
04121 Ubiquitin system [BR:
hhip04121
]
117755166 (bard1)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117755166 (bard1)
03400 DNA repair and recombination proteins [BR:
hhip03400
]
117755166 (bard1)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117755166 (bard1)
Ubiquitin system [BR:
hhip04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
117755166 (bard1)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117755166 (bard1)
DNA repair and recombination proteins [BR:
hhip03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117755166 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_3
Ank_4
Ank_5
BRCT_2
BRCT
zf-RING_5
zf-RING_10
PTCB-BRCT
zf-C3HC4_3
zf-C3HC4_4
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
117755166
NCBI-ProteinID:
XP_034430612
LinkDB
All DBs
Position
21:complement(10345563..10369104)
Genome browser
AA seq
803 aa
AA seq
DB search
MDDHVSVQTEDWKKTKEAAANFRRLLLCSKCSNLMKEPVCLGMCEHMVCRSCAGPRAGDG
CVVCHSPAWVKDIQINRQLSSIIQLFCGLDSLLNPADQPDSSVAEIQTQPGSPVLKHKKN
FKIWFSPRSRKVRCTVERPSEVSAPDSRSSGETAAAQPDTITAQHQDLSVFNFTSSSQDS
GSSSQTCDNGNGQRKKRSTKKNAASRKALVQRATRKQSKQTVKKKRLETINKQWGITEEV
DTSKEQEQPRAVGARRSSKRVSFLSPAVMLDQPQSEVPQGSTTDLSLGRSTTMESLSGGS
GTEMNRQVSADQSMSDSVIKQNANDHNPNGDPEKQDNVSPPKNSSKRTRVADKVDTEETT
PKRPRASPGRRRKTQDQISPVVLNPSVLTSPRWEKSKDGCRKEHERSPRVLAAVGRKSPG
AYASPHGRVSPGSPAIMKRNHKGETLLHLSAIKGDVEAVKELLDQGSDPNLKDNAGWTPL
HEACNLGHMAVVEALISKGALLNTPGYENDSPLHDAVRNGHPAIVKLLLQLGASQSVLNL
HGKRPADYAVSAEMLEIFQEAAEGTQCAITSFSPSASLTAVSECSRRDELLVFLPSKLPQ
PAQLQLAKLGELLGGKMSDTFSGSVSHVVVPEGHMPTTYSTLLGLLAGCWVVRYSWVEAS
LQAGKWMPETEHEAGEGPQRSRLNRCSLLPPLFDGCFFFLLGSFKAPTKDKLTKLLREGG
GQLLSRQPKPDSDVTQTLSAAAYHALTGSDQALCTQYIIFDPQGPHKPTVVRRGKVWSAP
SSWIIDCIAAFQLLPVPEPLILV
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggacgatcatgtttccgtgcagacagaagactggaagaaaactaaagaggcggctgcc
aacttccgccgcctgctgctttgctccaaatgctcgaacttaatgaaggaacccgtgtgt
ctcggaatgtgtgagcatatggtgtgcaggtcgtgtgccggcccccgggcaggagatggc
tgcgtggtgtgtcatagccctgcatgggtgaaggacatccagatcaacaggcagctgagc
agcattatacagctcttctgcggtttggactccctgctcaatcccgcagaccaaccagac
tcctcagttgctgagattcagacacaacctgggagccccgtcttaaagcacaagaagaac
ttcaagatctggttcagcccccgcagccgcaaggtgcgctgcacagtggagaggccttcg
gaggtcagcgcaccggacagcaggtcgtctggagaaacagctgcagcacagccagacaca
attactgctcaacaccaggatctgtcagttttcaatttcacctcgtcctcgcaagactcc
ggctcttcttctcaaacatgcgacaatggaaacggacaacggaagaagaggtcaactaag
aaaaatgctgccagcaggaaggcgttggtgcagagagccactcgaaagcagagtaagcag
acggtgaagaagaagaggctggagaccataaataagcaatgggggatcacagaggaggta
gatacctcaaaggaacaggagcagccacgtgccgtaggagccaggaggtccagtaaaagg
gtttccttcctcagccctgctgtcatgttggaccagcctcagtctgaagtgccacagggg
agcacgactgacctcagccttggcaggagcaccacgatggaaagcctctcagggggcagc
ggcactgaaatgaatcgccaagtctcagccgatcagagcatgtcggacagtgtcatcaag
caaaacgcaaatgaccacaatccaaatggcgatcctgaaaaacaggataacgtttctcct
ccgaagaattcctcaaaaagaaccagagtggcggataaagttgacacagaggagaccacg
ccaaaaaggcccagggcttcccccggccgaaggagaaagacacaggatcagatatcgcca
gtcgtccttaacccttcagttttgacaagccccaggtgggaaaagagcaaagacggctgc
agaaaggagcatgagcgcagcccccgtgtcttagctgctgttggtagaaaatctcccggt
gcttatgcttcacctcatggacgggtcagcccaggaagccctgcaattatgaagaggaac
cacaagggagagaccctgctgcatctatctgctattaagggagatgtagaagctgtcaag
gaactgctggaccaggggtctgaccctaacctgaaggataatgctgggtggacacctctg
cacgaagcgtgtaacctgggtcacatggcagttgtggaggcgttgatctcaaagggagcc
ctgttgaacacacctggctatgaaaacgattctccgctgcacgacgccgtgaggaacgga
catccagccatcgtcaaactgctgctgcagcttggagcctcacagagcgtacttaatctg
catggaaaacgtcctgcagattatgccgtgagcgcggagatgctggagattttccaggaa
gctgcagaaggaacccagtgtgcgatcacatctttcagcccctcagccagcctcactgcg
gtgagtgagtgttcgaggagggatgaactgctggtgtttctgcccagcaagcttcctcag
ccagcccagcttcaactggccaaactgggagagctactgggagggaagatgagtgacacc
ttctctggctcagtgagccatgtcgtggtgccagagggacacatgcccaccacctactcc
acacttctgggtcttcttgctggctgctgggttgtcagatacagctgggtggaggcatct
ctgcaggcaggcaagtggatgcccgaaactgagcacgaagcgggagaaggcccccagcgc
agtcggctaaacagatgtagcttgctcccaccgctcttcgatggctgcttcttcttcctc
ctgggctcctttaaggcgccaaccaaagacaagctcaccaagctgctgcgggagggagga
ggtcagctgctgagccgacagcccaagcccgacagcgacgtgacccaaaccctgagcgca
gcggcctaccacgccctaacaggctctgaccaggccctctgcacccagtacatcatcttc
gacccccagggccctcacaagccgacagtggtcagacgaggcaaggtatggtcggctccc
tccagctggattatcgactgcatcgcagccttccagctcctccctgtgccggagcctcta
atattagtctaa
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