KEGG   Homo sapiens (human): 84557
Entry
84557             CDS       T01001                                 
Symbol
MAP1LC3A, ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3
Name
(RefSeq) microtubule associated protein 1 light chain 3 alpha
  KO
K10435  microtubule-associated protein 1 light chain
Organism
hsa  Homo sapiens (human)
Pathway
hsa04137  Mitophagy - animal
hsa04140  Autophagy - animal
hsa04216  Ferroptosis
hsa04371  Apelin signaling pathway
hsa04621  NOD-like receptor signaling pathway
hsa05014  Amyotrophic lateral sclerosis
hsa05022  Pathways of neurodegeneration - multiple diseases
hsa05131  Shigellosis
hsa05167  Kaposi sarcoma-associated herpesvirus infection
Network
nt06164  Kaposi sarcoma-associated herpesvirus (KSHV)
nt06182  Shigella
nt06464  Amyotrophic lateral sclerosis
nt06466  Pathways of neurodegeneration
nt06532  Autophagy
nt06536  Mitophagy
  Element
N00156  Autophagy-vesicle nucleation/elongation/maturation, LC3-II formation
N01137  PINK-Parkin-mediated autophagosome formation
N01139  Mutation-inactivated p62 to PINK-Parkin-mediated autophagosome formation
N01140  TBK1-mediated autophagosome formation
N01141  Mutation-inactivated TBK1 to TBK1-mediated autophagosome formation
N01716  Autophagy-vesicle nucleation/elongation/maturation, sequestosome-1-like receptor
N01721  Autophagosome and lysosome fusion, tethering factor
N01722  Autophagosome and lysosome fusion, tethering factor, GRASP55
N01756  PINK-Parkin-independent ubiquitin-mediated mitophagy
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04371 Apelin signaling pathway
    84557 (MAP1LC3A)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    84557 (MAP1LC3A)
   04137 Mitophagy - animal
    84557 (MAP1LC3A)
  09143 Cell growth and death
   04216 Ferroptosis
    84557 (MAP1LC3A)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    84557 (MAP1LC3A)
 09160 Human Diseases
  09172 Infectious disease: viral
   05167 Kaposi sarcoma-associated herpesvirus infection
    84557 (MAP1LC3A)
  09171 Infectious disease: bacterial
   05131 Shigellosis
    84557 (MAP1LC3A)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    84557 (MAP1LC3A)
   05022 Pathways of neurodegeneration - multiple diseases
    84557 (MAP1LC3A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsa04131]
    84557 (MAP1LC3A)
   03029 Mitochondrial biogenesis [BR:hsa03029]
    84557 (MAP1LC3A)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:hsa04812]
    84557 (MAP1LC3A)
Membrane trafficking [BR:hsa04131]
 Autophagy
  Mitophagy
   Other mitophagy associated  proteins
    84557 (MAP1LC3A)
Mitochondrial biogenesis [BR:hsa03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Other mitophagy factors
    84557 (MAP1LC3A)
Cytoskeleton proteins [BR:hsa04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule-associated proteins (MAPs)
     84557 (MAP1LC3A)
SSDB
Motif
Pfam: ATG8 APG12
Other DBs
NCBI-GeneID: 84557
NCBI-ProteinID: NP_115903
OMIM: 601242
HGNC: 6838
Ensembl: ENSG00000101460
UniProt: Q9H492
Structure
LinkDB
Position
20:34546844..34560345
AA seq 121 aa
MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
F
NT seq 366 nt   +upstreamnt  +downstreamnt
atgccctcagaccggcctttcaagcagcggcggagcttcgccgaccgctgtaaggaggta
cagcagatccgcgaccagcaccccagcaaaatcccggtgatcatcgagcgctacaagggt
gagaagcagctgcccgtcctggacaagaccaagtttttggtcccggaccatgtcaacatg
agcgagttggtcaagatcatccggcgccgcctgcagctgaaccccacgcaggccttcttc
ctgctggtgaaccagcacagcatggtgagtgtgtccacgcccatcgcggacatctacgag
caggagaaagacgaggacggcttcctctatatggtctacgcctcccaggaaaccttcggc
ttctga

KEGG   Homo sapiens (human): 81631
Entry
81631             CDS       T01001                                 
Symbol
MAP1LC3B, ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a
Name
(RefSeq) microtubule associated protein 1 light chain 3 beta
  KO
K10435  microtubule-associated protein 1 light chain
Organism
hsa  Homo sapiens (human)
Pathway
hsa04137  Mitophagy - animal
hsa04140  Autophagy - animal
hsa04216  Ferroptosis
hsa04371  Apelin signaling pathway
hsa04621  NOD-like receptor signaling pathway
hsa05014  Amyotrophic lateral sclerosis
hsa05022  Pathways of neurodegeneration - multiple diseases
hsa05131  Shigellosis
hsa05167  Kaposi sarcoma-associated herpesvirus infection
Network
nt06164  Kaposi sarcoma-associated herpesvirus (KSHV)
nt06182  Shigella
nt06464  Amyotrophic lateral sclerosis
nt06466  Pathways of neurodegeneration
nt06532  Autophagy
nt06536  Mitophagy
  Element
N00156  Autophagy-vesicle nucleation/elongation/maturation, LC3-II formation
N01137  PINK-Parkin-mediated autophagosome formation
N01139  Mutation-inactivated p62 to PINK-Parkin-mediated autophagosome formation
N01140  TBK1-mediated autophagosome formation
N01141  Mutation-inactivated TBK1 to TBK1-mediated autophagosome formation
N01716  Autophagy-vesicle nucleation/elongation/maturation, sequestosome-1-like receptor
N01721  Autophagosome and lysosome fusion, tethering factor
N01722  Autophagosome and lysosome fusion, tethering factor, GRASP55
N01756  PINK-Parkin-independent ubiquitin-mediated mitophagy
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04371 Apelin signaling pathway
    81631 (MAP1LC3B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    81631 (MAP1LC3B)
   04137 Mitophagy - animal
    81631 (MAP1LC3B)
  09143 Cell growth and death
   04216 Ferroptosis
    81631 (MAP1LC3B)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    81631 (MAP1LC3B)
 09160 Human Diseases
  09172 Infectious disease: viral
   05167 Kaposi sarcoma-associated herpesvirus infection
    81631 (MAP1LC3B)
  09171 Infectious disease: bacterial
   05131 Shigellosis
    81631 (MAP1LC3B)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    81631 (MAP1LC3B)
   05022 Pathways of neurodegeneration - multiple diseases
    81631 (MAP1LC3B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsa04131]
    81631 (MAP1LC3B)
   03029 Mitochondrial biogenesis [BR:hsa03029]
    81631 (MAP1LC3B)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:hsa04812]
    81631 (MAP1LC3B)
Membrane trafficking [BR:hsa04131]
 Autophagy
  Mitophagy
   Other mitophagy associated  proteins
    81631 (MAP1LC3B)
Mitochondrial biogenesis [BR:hsa03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Other mitophagy factors
    81631 (MAP1LC3B)
Cytoskeleton proteins [BR:hsa04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule-associated proteins (MAPs)
     81631 (MAP1LC3B)
SSDB
Motif
Pfam: ATG8 APG12 Rad60-SLD
Other DBs
NCBI-GeneID: 81631
NCBI-ProteinID: NP_073729
OMIM: 609604
HGNC: 13352
Ensembl: ENSG00000140941
UniProt: Q9GZQ8 Q658J6
Structure
LinkDB
Position
16:87392336..87404774
AA seq 125 aa
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
MKLSV
NT seq 378 nt   +upstreamnt  +downstreamnt
atgccgtcggagaagaccttcaagcagcgccgcaccttcgaacaaagagtagaagatgtc
cgacttattcgagagcagcatccaaccaaaatcccggtgataatagaacgatacaagggt
gagaagcagcttcctgttctggataaaacaaagttccttgtacctgaccatgtcaacatg
agtgagctcatcaagataattagaaggcgcttacagctcaatgctaatcaggccttcttc
ctgttggtgaacggacacagcatggtcagcgtctccacaccaatctcagaggtgtatgag
agtgagaaagatgaagatggattcctgtacatggtctatgcctcccaggagacgttcggg
atgaaattgtcagtgtaa

KEGG   Homo sapiens (human): 643246
Entry
643246            CDS       T01001                                 
Symbol
MAP1LC3B2, ATG8G
Name
(RefSeq) microtubule associated protein 1 light chain 3 beta 2
  KO
K10435  microtubule-associated protein 1 light chain
Organism
hsa  Homo sapiens (human)
Pathway
hsa04137  Mitophagy - animal
hsa04140  Autophagy - animal
hsa04216  Ferroptosis
hsa04371  Apelin signaling pathway
hsa04621  NOD-like receptor signaling pathway
hsa05014  Amyotrophic lateral sclerosis
hsa05022  Pathways of neurodegeneration - multiple diseases
hsa05131  Shigellosis
hsa05167  Kaposi sarcoma-associated herpesvirus infection
Network
nt06164  Kaposi sarcoma-associated herpesvirus (KSHV)
nt06182  Shigella
nt06464  Amyotrophic lateral sclerosis
nt06466  Pathways of neurodegeneration
nt06532  Autophagy
nt06536  Mitophagy
  Element
N00156  Autophagy-vesicle nucleation/elongation/maturation, LC3-II formation
N01137  PINK-Parkin-mediated autophagosome formation
N01139  Mutation-inactivated p62 to PINK-Parkin-mediated autophagosome formation
N01140  TBK1-mediated autophagosome formation
N01141  Mutation-inactivated TBK1 to TBK1-mediated autophagosome formation
N01716  Autophagy-vesicle nucleation/elongation/maturation, sequestosome-1-like receptor
N01721  Autophagosome and lysosome fusion, tethering factor
N01722  Autophagosome and lysosome fusion, tethering factor, GRASP55
N01756  PINK-Parkin-independent ubiquitin-mediated mitophagy
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04371 Apelin signaling pathway
    643246 (MAP1LC3B2)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    643246 (MAP1LC3B2)
   04137 Mitophagy - animal
    643246 (MAP1LC3B2)
  09143 Cell growth and death
   04216 Ferroptosis
    643246 (MAP1LC3B2)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    643246 (MAP1LC3B2)
 09160 Human Diseases
  09172 Infectious disease: viral
   05167 Kaposi sarcoma-associated herpesvirus infection
    643246 (MAP1LC3B2)
  09171 Infectious disease: bacterial
   05131 Shigellosis
    643246 (MAP1LC3B2)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    643246 (MAP1LC3B2)
   05022 Pathways of neurodegeneration - multiple diseases
    643246 (MAP1LC3B2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsa04131]
    643246 (MAP1LC3B2)
   03029 Mitochondrial biogenesis [BR:hsa03029]
    643246 (MAP1LC3B2)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:hsa04812]
    643246 (MAP1LC3B2)
Membrane trafficking [BR:hsa04131]
 Autophagy
  Mitophagy
   Other mitophagy associated  proteins
    643246 (MAP1LC3B2)
Mitochondrial biogenesis [BR:hsa03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Other mitophagy factors
    643246 (MAP1LC3B2)
Cytoskeleton proteins [BR:hsa04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule-associated proteins (MAPs)
     643246 (MAP1LC3B2)
SSDB
Motif
Pfam: ATG8 APG12 Rad60-SLD ATG5_UblB
Other DBs
NCBI-GeneID: 643246
NCBI-ProteinID: NP_001078950
OMIM: 620673
HGNC: 34390
Ensembl: ENSG00000258102
UniProt: A6NCE7
LinkDB
Position
12:116559381..116576606
AA seq 125 aa
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG
MKLSV
NT seq 378 nt   +upstreamnt  +downstreamnt
atgccgtcggagaagaccttcaagcagcggcgcaccttcgaacaaagagtagaagatgtc
cgacttattcgagagcagcatccaaccaaaatcccggtgataatagaacgatacaagggt
gagaagcagcttcctgttctggataaaacaaagttccttgtacctgaccatgtcaacatg
agtgagctcatcaagataattagaaggcgcttacagctcaatgctaatcaggccttcttc
ctgttggtgaacggacacagcatggtcagcgtctccacaccaatctcagaggtgtatgag
agtgagaaagatgaagatggattcctgtacatggtctgtgcctcccaggagacgttcggg
atgaaattgtcagtgtaa

KEGG   Homo sapiens (human): 440738
Entry
440738            CDS       T01001                                 
Symbol
MAP1LC3C, ATG8J, LC3C
Name
(RefSeq) microtubule associated protein 1 light chain 3 gamma
  KO
K10435  microtubule-associated protein 1 light chain
Organism
hsa  Homo sapiens (human)
Pathway
hsa04137  Mitophagy - animal
hsa04140  Autophagy - animal
hsa04216  Ferroptosis
hsa04371  Apelin signaling pathway
hsa04621  NOD-like receptor signaling pathway
hsa05014  Amyotrophic lateral sclerosis
hsa05022  Pathways of neurodegeneration - multiple diseases
hsa05131  Shigellosis
hsa05167  Kaposi sarcoma-associated herpesvirus infection
Network
nt06164  Kaposi sarcoma-associated herpesvirus (KSHV)
nt06182  Shigella
nt06464  Amyotrophic lateral sclerosis
nt06466  Pathways of neurodegeneration
nt06532  Autophagy
nt06536  Mitophagy
  Element
N00156  Autophagy-vesicle nucleation/elongation/maturation, LC3-II formation
N01137  PINK-Parkin-mediated autophagosome formation
N01139  Mutation-inactivated p62 to PINK-Parkin-mediated autophagosome formation
N01140  TBK1-mediated autophagosome formation
N01141  Mutation-inactivated TBK1 to TBK1-mediated autophagosome formation
N01716  Autophagy-vesicle nucleation/elongation/maturation, sequestosome-1-like receptor
N01721  Autophagosome and lysosome fusion, tethering factor
N01722  Autophagosome and lysosome fusion, tethering factor, GRASP55
N01756  PINK-Parkin-independent ubiquitin-mediated mitophagy
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04371 Apelin signaling pathway
    440738 (MAP1LC3C)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    440738 (MAP1LC3C)
   04137 Mitophagy - animal
    440738 (MAP1LC3C)
  09143 Cell growth and death
   04216 Ferroptosis
    440738 (MAP1LC3C)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    440738 (MAP1LC3C)
 09160 Human Diseases
  09172 Infectious disease: viral
   05167 Kaposi sarcoma-associated herpesvirus infection
    440738 (MAP1LC3C)
  09171 Infectious disease: bacterial
   05131 Shigellosis
    440738 (MAP1LC3C)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    440738 (MAP1LC3C)
   05022 Pathways of neurodegeneration - multiple diseases
    440738 (MAP1LC3C)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsa04131]
    440738 (MAP1LC3C)
   03029 Mitochondrial biogenesis [BR:hsa03029]
    440738 (MAP1LC3C)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:hsa04812]
    440738 (MAP1LC3C)
Membrane trafficking [BR:hsa04131]
 Autophagy
  Mitophagy
   Other mitophagy associated  proteins
    440738 (MAP1LC3C)
Mitochondrial biogenesis [BR:hsa03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Other mitophagy factors
    440738 (MAP1LC3C)
Cytoskeleton proteins [BR:hsa04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule-associated proteins (MAPs)
     440738 (MAP1LC3C)
SSDB
Motif
Pfam: ATG8 APG12
Other DBs
NCBI-GeneID: 440738
NCBI-ProteinID: NP_001004343
OMIM: 609605
HGNC: 13353
Ensembl: ENSG00000197769
UniProt: Q9BXW4
Structure
LinkDB
Position
1:complement(241995490..242001393)
AA seq 147 aa
MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
SQETFGCLESAAPRDGSSLEDRPCNPL
NT seq 444 nt   +upstreamnt  +downstreamnt
atgccgcctccacagaaaatcccaagcgtcagacccttcaagcagaggaaaagcttggca
atcagacaagaggaagttgctggaatccgggcaaagttccccaacaaaatcccggtggta
gtggagcgctaccccagggagacgttcctgcccccgctggacaaaaccaagttcctggtc
ccgcaggagctgaccatgacccagttcctcagcatcatccggagccgcatggtcctgaga
gccacggaagccttttacttgctggtgaacaacaagagcctggtcagcatgagcgcaacc
atggcagagatctacagagactacaaggatgaggatggcttcgtgtacatgacctacgcc
tcccaggagacatttggctgcctggagtcagcagcccccagggatgggagcagccttgag
gacagaccctgcaatcctctctag

KEGG   COMPOUND: C00350
Entry
C00350                      Compound                               
Name
Phosphatidylethanolamine;
(3-Phosphatidyl)ethanolamine;
(3-Phosphatidyl)-ethanolamine;
Cephalin;
O-(1-beta-Acyl-2-acyl-sn-glycero-3-phospho)ethanolamine;
1-Acyl-2-acyl-sn-glycero-3-phosphoethanolamine;
L-1-Phosphatidylethanolamine
Formula
C7H12NO8PR2
Structure
Remark
ATC code: A05BA10
Comment
Generic compound in reaction hierarchy
Reaction
Pathway
map00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
map00564  Glycerophospholipid metabolism
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map04136  Autophagy - other
map04138  Autophagy - yeast
map04140  Autophagy - animal
map04723  Retrograde endocannabinoid signaling
map05130  Pathogenic Escherichia coli infection
map05167  Kaposi sarcoma-associated herpesvirus infection
Module
M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC
M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE
M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Network
nt06164  Kaposi sarcoma-associated herpesvirus (KSHV)
nt06182  Shigella
nt06464  Amyotrophic lateral sclerosis
nt06466  Pathways of neurodegeneration
nt06532  Autophagy
nt06536  Mitophagy
Enzyme
2.1.1.17        2.3.1.23        2.3.1.40        2.7.8.1         
2.7.8.29        2.7.8.42        2.7.8.43        2.7.8.-         
2.7.-.-         3.1.1.4         3.1.1.32        3.1.4.3         
3.1.4.4         4.1.1.65
Brite
Compounds with biological roles [BR:br08001]
 Lipids
  Phospholipids
   Glycerophospholipids
    C00350  Phosphatidylethanolamine
Lipids [BR:br08002]
 GP  Glycerophospholipids
  GP02 Glycerophosphoethanolamines
   GP0201 Diacylglycerophosphoethanolamines
    C00350  1-Acyl-2-acyl-sn-glycero-3-phosphoethanolamine
Anatomical Therapeutic Chemical (ATC) classification [BR:br08303]
 A ALIMENTARY TRACT AND METABOLISM
  A05 BILE AND LIVER THERAPY
   A05B LIVER THERAPY, LIPOTROPICS
    A05BA Liver therapy
     A05BA10 Phospholipids
      C00350  Phosphatidylethanolamine
Other DBs
CAS: 39382-08-6
PubChem: 3643
ChEBI: 16038
LinkDB
KCF data

ATOM        19
            1   C1c C    24.0320  -15.8183
            2   C1b C    24.0437  -17.6595
            3   C1b C    24.0437  -14.0877
            4   O7a O    22.4646  -15.8473
            5   O2b O    25.3780  -17.6595
            6   O7a O    25.3780  -14.0877
            7   C7a C    21.1302  -15.8473
            8   P1b P    26.7064  -17.6595
            9   C7a C    26.7064  -14.0877
            10  O6a O    21.1245  -14.5072
            11  R   R    19.8017  -15.8473
            12  O2b O    28.0408  -17.6595
            13  O1c O    26.7707  -18.9996
            14  O1c O    26.7064  -16.2727
            15  O6a O    26.7707  -12.7534
            16  R   R    28.0408  -14.0877
            17  C1b C    29.1946  -16.9952
            18  C1b C    30.3541  -17.6595
            19  N1a N    31.5077  -16.9952
BOND        18
            1     1   2 1
            2     1   3 1
            3     1   4 1
            4     2   5 1
            5     3   6 1
            6     4   7 1
            7     5   8 1
            8     6   9 1
            9     7  10 2
            10    7  11 1
            11    8  12 1
            12    8  13 1
            13    8  14 2
            14    9  15 2
            15    9  16 1
            16   12  17 1
            17   17  18 1
            18   18  19 1

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