Ictalurus punctatus (channel catfish): 108267028
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Entry
108267028 CDS
T04658
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108267028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108267028
04121 Ubiquitin system [BR:
ipu04121
]
108267028
03036 Chromosome and associated proteins [BR:
ipu03036
]
108267028
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108267028
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108267028
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
108267028
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108267028
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108267028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
zf-RING_6
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
zf-C3HC4
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
108267028
NCBI-ProteinID:
XP_017326392
Ensembl:
ENSIPUG00000008007
UniProt:
A0A2D0R728
LinkDB
All DBs
Position
6:5443555..5463968
Genome browser
AA seq
729 aa
AA seq
DB search
MASDPGAESDNGMWVKTREAMAHFRKLLLCSKCSNILSEPVCLGACEHLLCRSCAGPRVG
DGCSVCLSPSWVKDVHINRQISNITQLFLQLEAVLHPSECSAPPADSSAPSPGSSVLTKK
KNFKIWFSPKSRKVRCRAENPADSNLSAPQRSDSGVLSVFNFTSSSSQDSGSSTPPRVRR
GAEQKKTMTGRKKRKRVVRKQIRGTRIPSKEKKMRLEAVNQQWGLGKDDPVEDSVKQNEA
RCGKRVSFQCPSAEEDQQEVLQCEKRVLRRSILKDGTEKTPDQALSELQPPRSSPKRSEP
RGGSPQSTPKHPRQDRSPSQRVRRRTRSGPSSETSSIFEKSVEERKGKESSGSSPATGRS
QTSPAYMKRNHKGETPLHLAAIKGDVEMTKALLEQGADPNLKDHAGWTPLHEACNLGHMG
VVEVLLQQGALINTPGYENDSPLHDAVRNGHASVAKLLLQHGASTTVLNIFGLRPVDYAT
TPEMREVLSLVPEGPHSVTTPVSSPGNLSKSPALMKKDVKATLIGSKLTADQQNQLAKAA
RVLRGRRVESFSSAVTHVVVPDGPMPSTLTVLQGILNGCWVLTFRWLAECLQQGRRIEES
EFEVAEGPQRARANRVSLLPPLFNGCFFYLLGSFHKPPRDELVQLVKAGGGQLLSRQPKA
DSDVTQTVTAAAYHARPDSDQALCTHYILYEPQSSSRPGPVRLGKVWSAPSSWLLDCIRA
FSLLPVPEL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgatcctggagcagagtcagataatgggatgtgggttaaaactcgagaggcc
atggcacatttccggaagctacttttgtgctctaaatgctcgaacatcctgagtgagccg
gtgtgtctgggagcctgtgagcatctactgtgcaggtcgtgtgcgggtcctcgggtggga
gacggctgcagtgtgtgtctcagtccctcctgggtgaaagacgtccacatcaacagacag
atcagtaacatcacacagctcttcctgcagctagaggctgtgctccatccttccgagtgc
tcggcgcctcctgctgattcttcagcaccctcgccgggatcctccgtcctcaccaagaag
aagaactttaagatctggttcagtccgaagagccgtaaagtgcgctgtcgagcggagaac
ccagcagactcgaatctgtctgcaccgcaacgctccgactccggcgtcctgtccgtcttc
aacttcacctcctcctcctcccaggattcaggctcctccacacctcccagggtgagacga
ggggctgagcagaagaagacgatgacgggacgaaagaaacgaaagcgcgtcgttaggaag
cagatacgaggcaccaggattccgagtaaggaaaagaagatgaggctggaggccgtgaac
cagcagtgggggttggggaaagatgatccggtggaggactcggtgaagcagaacgaggcg
aggtgcggtaagagggtatccttccagtgtccaagcgctgaagaagaccagcaggaggtt
cttcagtgtgagaaacgagtgctcaggaggagcatcctgaaagacgggacagagaagaca
cctgatcaagcgctctctgagctccagcctcctcgttcttctccgaaaagatccgaacca
cgaggtggaagtccgcagagcacgccgaagcatcccagacaagacagatctccgagccag
agggtgaggaggaggacgagatcaggtccgtcttcagagacttccagcatttttgaaaaa
tccgtagaggaaaggaaagggaaggaaagctcagggagctctcctgccactgggaggagc
cagactagccccgcctacatgaagaggaaccataaaggagagacgcctctgcaccttgct
gccattaagggtgacgtggagatgacgaaagcgctcctggagcagggagccgaccccaac
ctgaaggaccacgccggctggaccccactgcacgaggcgtgtaacctgggtcacatgggt
gtagtggaagtgctgctccagcagggggcgctgattaacacacccggatacgagaacgac
tctcctctacacgacgccgtgaggaacggccacgcctctgtcgccaaactactgcttcag
cacggcgcctcgaccactgtactgaatatatttggtcttcgacctgttgattacgccacg
actccagaaatgcgagaggtcctaagtttggtccctgagggacctcattccgtaaccacg
ccagtgagctctccaggaaatctgtcaaagtctccagctctgatgaagaaggatgtcaag
gccactctgatcggtagtaaactgacagcggatcagcagaaccagctcgccaaagctgct
cgagtcctgcgaggaagacgagtcgagagtttctccagcgcagtcacacatgtggtagtg
ccggatggtcccatgccctccaccctcaccgtcctgcagggaatcctcaacggctgctgg
gtcctaaccttcagatggctggcggagtgtctgcagcagggccgtcggatagaggagagc
gagttcgaggtggccgagggtcctcagagggctcgggcgaacagagtcagtctgttgcct
cctctcttcaacggctgcttcttctacctgctcggctctttccacaagcctcccagagac
gagctggtgcagctggtgaaggcaggaggaggccagctgctcagccggcagcccaaagcc
gacagcgacgtgactcagacggtaacggcggcggcgtatcacgctcggcccgactcggat
caggcgctctgcactcactacatcctgtacgagccgcagagctcgagcagacccgggccg
gtccgtctgggcaaagtgtggtcagctccttcatcatggcttctggactgcatcagggcc
ttcagcctccttcctgtgcccgagctctga
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integrated database retrieval system
