Larimichthys crocea (large yellow croaker): 104939299
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Entry
104939299 CDS
T04659
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104939299 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104939299 (hdac6)
04131 Membrane trafficking [BR:
lco04131
]
104939299 (hdac6)
03036 Chromosome and associated proteins [BR:
lco03036
]
104939299 (hdac6)
Enzymes [BR:
lco01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
104939299 (hdac6)
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104939299 (hdac6)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
104939299 (hdac6)
Membrane trafficking [BR:
lco04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
104939299 (hdac6)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
104939299 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
104939299
NCBI-ProteinID:
XP_027131423
LinkDB
All DBs
Position
Unknown
AA seq
1076 aa
AA seq
DB search
MSSGSEPPESGLKSVRRSPRLSPQSSGVEGKKEEKKGGSSLQEVKRRGKMERSREEEEEM
NDRLKKLDLSSRSAATGTGLVYSKVFTHHKNLWDPSHPECPDRVTSIMEELDRQELLSHC
ITVEPREASEEELLLGHMKHVDLMKSTQTMTQSELQTLSEKYDSVYIHPESFQVSVLAVG
SVLQLVDRVVTSELRNGFAIIRPPGHHAQCNEANGFSIFNNVAIAARYARTRHSVSRVLI
VDWDVHHGQGVQYLFQEDPSVLYFSVHRYEGGSFWPHLPESDSQFVGSGRAEGRNINLPW
NKTGMTDADYITAFQQLLLPVAHEFQPQLVLVCAGFDAAVGDPKGDMRVSPQCFHVLTHM
LMSLAEGRLVLALEGGYDLQSTAEGAAACVRALLGGACPPLTPPTAPSDSALQSVSQTIS
ALYPHWACLQILEGVSLAKGSVIRETNKQSAKQSSPARYVATTTGLVYDERMMEHMNMWD
RHHPEQPQRIFKIFSKHQQLGLVDRCQRIPARLATEEELSRCHSVQHIEQMKSTAVMKPR
DLHKLGVEFNSIYINNQSYRSALLAAGGCFNAVESILTGQVSNGVAIVRPPGHHAERDSP
CGFCFFNTAALAARHAQNISHDAPLRVLILDWDVHHGNGTQHMFEDDDSVLYVSLHRYDN
GMFFPSSEDAAPDRVGVSKGAGFNVNVAWNGGRMGDSDYLAAFHHVVMPIATEFDPGLVL
VSAGFDAARGDPLGGYHVTPEGYAHLTHQLMSLAGGRVLLILEGGYNLTSISDSMAMCTS
VLQGDPPPSLVTPLPPPHHSAVATINEVIRHHAPYWRSLRIHIPECVRASLPALKHRGKR
SSKGKGRKSDKPPLPPTGQEAHSLEQLTQGLASLDISQISASHTPATSTAVGGARPKVRL
SPEKVTCGGEVTLGQSQSAESMELQTQTVVVAASESVAAGEKCTSEGGAEPETEGACGWS
KRQTSLELMCGGQTAPLYVVDPLSWCPHLDSVKSPPPSGIDVSLLCQDCGSDAENWTCLT
CYQVFCGRYVNEHMVTHGVMSEHPMVLSFSDLSVWCYLCEAYVHHQVTDTVQTTNR
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctggatcagaacctccagaatctggactaaagtcggtcagaagatctccacgt
ctgtctcctcagagcagtggagttgaaggaaagaaggaggagaagaaaggagggagcagt
ctgcaggaggtgaagaggagaggaaagatggagaggagcagagaagaagaggaggagatg
aacgacagactgaagaagctggatctgtccagtcgatcagcagctactggaactggtctg
gtttactccaaggtcttcacccaccacaagaacctgtgggaccccagtcacccagagtgt
ccggaccgagtgacgtccatcatggaggagttggacagacaggagctgctgtctcactgc
atcacagtggagcccagagaagcttcagaagaagagctgctgctcggtcacatgaaacat
gtggatttgatgaagtcgactcagacgatgacgcagagtgaactccaaactctgtctgag
aaatacgactcagtttacattcatcctgagtctttccaggtgagtgtgttggcggtgggt
tcagttctccagctggttgatcgggttgtgacctctgaactcaggaacggatttgccatc
atcagacctccaggtcatcacgctcagtgtaacgaggcgaatggtttcagcatcttcaac
aacgtggcaatcgcagctcgatacgctcggaccagacactcagtcagcagggtgctgatt
gtggactgggacgttcatcatggtcagggtgtccagtatctgttccaggaagaccccagc
gtcctgtacttcagtgtccacaggtatgagggcgggtctttctggccccacctcccagag
tcggacagccagtttgtcggcagtggacgagctgaaggcagaaacatcaacctgccctgg
aacaagaccggaatgacagacgctgattacatcacagcttttcaacaactgctgcttcct
gtagctcatgagtttcagcctcagctggttctggtctgtgctggatttgatgctgcagtc
ggagatccaaagggggacatgcgtgtcagtcctcagtgtttccatgttctcactcacatg
ttgatgagtttggctgaaggtcgacttgttctcgccctcgagggaggttatgacctgcag
tcgacagcagagggcgctgctgcctgtgtcagagctctgctgggaggagcctgtcctcct
ctgactccgcccaccgccccatctgacagtgctttgcagtctgtctctcagaccatctca
gctttgtatccacactgggcgtgtctacagattctggaaggtgtctcattggccaagggg
agtgtcatcagagaaaccaataagcagagtgctaagcaatctagccccgcccgttatgtt
gctacgacaacaggtctggtttatgatgagcggatgatggagcacatgaacatgtgggac
agacatcatcctgagcagcctcagaggatctttaaaatcttctccaaacatcaacagctg
ggattggtcgatcgttgccagcggataccagctcgcttagcaacagaggaggagctgtcc
aggtgtcacagtgtgcagcacatcgagcagatgaagagcacggcggtgatgaagcccaga
gatttacacaaacttggagtcgagttcaactcgatctacatcaacaaccagagctacagg
agcgctctgctcgctgctggaggctgcttcaacgccgtggagagcatcctcacaggacag
gtgagtaacggcgtggcgatcgtccgtcctcctggtcatcacgcagagagagattctccg
tgcggtttctgcttcttcaacacggcagcgctcgccgctcgccacgcccaaaacatctcc
catgatgcaccgctgcgcgttctcatcctggactgggatgttcaccatggcaacgggacg
cagcacatgtttgaggatgacgacagcgtcctgtatgtctccctccatcgctatgacaac
gggatgttcttcccgtcctcagaggacgccgcccccgacagggtgggcgtgtccaagggg
gcggggtttaacgtcaatgtagcgtggaatggagggcggatgggcgactctgactacctc
gccgcctttcaccacgtggtcatgccgatcgccaccgagtttgaccctggtctggtgctg
gtgtcagccgggttcgatgcggctcggggggatccgctgggcggatatcatgtgaccccg
gagggatacgcccacctcacacaccagctgatgtcactagcaggggggcgtgtcctactc
atactggagggaggttataacttaacatccatctctgactccatggcgatgtgcaccagc
gtgttgcaaggagacccccctccctccttagtgacacccctcccccctcctcatcacagc
gccgtagcaacaatcaacgaggtcatcagacaccacgccccctactggaggtcactgagg
atccacatcccagagtgtgtgcgggcgtccctgcccgccctgaagcatcgtgggaaacgt
agttctaaaggaaaaggcaggaagtcggacaaaccaccgctgcctcctacaggacaggag
gcgcacagcctggagcagctcacgcagggattggccagtttggacatcagtcaaatctca
gccagtcacacgcctgccacgtccacagcagtgggtggggccaggccgaaggtccgcctc
agcccggagaaggtcacctgtggaggtgaagtgacacttgggcagagccaatcagcagag
agcatggagctgcagacccagacggttgtcgtggcagcgtcagagtcggttgccgctgga
gagaaatgtacaagtgaagggggggcggagccagagacagagggagcgtgtggttggtca
aagcgtcagacgtctctggagctgatgtgtggaggacagacggcccctctgtacgtagtg
gaccctctgtcttggtgtcctcacctggactccgttaagtcccccccaccctcaggtata
gatgtctccctgttgtgtcaggactgtgggtctgatgctgagaactggacctgtctcacc
tgctaccaggtgttctgtggtcgttatgttaatgagcatatggtgactcacggcgtgatg
tcagaacatcccatggtgcttagcttctctgacctctccgtgtggtgttacctgtgtgag
gcctacgtccaccaccaggtaacagacacagtacagaccacaaacagataa
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integrated database retrieval system
