Leucoraja erinacea (little skate): 129698892
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Entry
129698892 CDS
T09122
Symbol
bard1
Name
(RefSeq) LOW QUALITY PROTEIN: BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129698892 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129698892 (bard1)
04121 Ubiquitin system [BR:
leri04121
]
129698892 (bard1)
03036 Chromosome and associated proteins [BR:
leri03036
]
129698892 (bard1)
03400 DNA repair and recombination proteins [BR:
leri03400
]
129698892 (bard1)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
129698892 (bard1)
Ubiquitin system [BR:
leri04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
129698892 (bard1)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
129698892 (bard1)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
129698892 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
Ank_4
zf-RING_6
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
129698892
NCBI-ProteinID:
XP_055494281
LinkDB
All DBs
Position
7:complement(37910101..38100515)
Genome browser
AA seq
801 aa
AA seq
DB search
MSERDAGPGLRLRLTQTHSWARTGQAVAALQQMLQCSSCCKLLQEPVCLGGCEHVFCCVC
VADSLGNGCPVCHAPAWVKDLQPNRQLHNIAHLCSQLQDLLNNKGSPADKSNPATPEMKA
ESKTGKKWQIRTWFSPRSRKLKCVLDAVKKPQKITPCSDINGTPPSVFEFISSPSPPHGS
PKKKTSDKSKRGSRKRLTDINKDWGFGKRTIMNIERENDSTGDMDHDRVVSFSSEPLVCS
SQRQAVPDDTAEALDHSDTISPVHNIIDSKVESVTKRTADNPSEASNNAATSSCKAISPG
QLPQIFDEEHLVPLPKAHASAKRSRKSSDSSSKTPSKKIKKGQSSCLKTSPSCSKNTCDP
SRSDTQDQSVTPLRLKSELSEAINETQAISSIDNSCNTSSNRGDDGKNQHATQKSPCTPR
STPKSNLVGSCATTPISPLTPTMKKNHKGETPLHIASIKGDIAAVEQLLENGANPNIKDN
AGWTPLHEACNHGHMKVVQLLLQFGVLVNTPGYENDSPLHDAVKNGHVNVVKLLVSHGAS
QDVINIFGMRPKDYANAEELIAALQQSPEDENPLVEQCFMSSASQRRDEPIMLLGSGLRP
ADKNKMDKLIKQLNFGSCTEFSSSVTHIIVPNDNAPCTKKCLMGIISGCWLVDLQWVTAC
LECKGRVSEEAYEINSMTGPKRGRLNRERQLPKLFDGCHFYFMGLFKSCKREDLVQMAKT
GGGQILARQPKPDSDVTQSINTVAYHATPGSDQSFCTQYIIYDKDSDYKPKKTRLGKVWT
THSAWLINCVKSFELLPVAEN
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagcgtgatgctgggcccggactcagactcagactcactcagactcattcgtgg
gctcggactggccaggctgtggccgcgcttcagcagatgctgcagtgctccagctgttgc
aagctgcttcaggagcctgtctgtcttggaggctgtgagcatgtgttttgctgtgtttgc
gttgctgattctcttgggaatggatgtccagtatgtcatgccccagcatgggtgaaagat
ctgcagccaaatcgacagctgcacaatattgcccacttatgcagccaacttcaagatctc
ttgaataacaaaggctctccagctgataaaagtaacccagctacaccggaaatgaaagct
gaaagcaaaactggtaaaaagtggcaaatcagaacgtggtttagtccacgcagtagaaaa
ttgaagtgtgttctggatgctgtgaagaagcctcagaagataactccatgttctgatatt
aatggaacgccaccttctgtgtttgaattcatatcatcaccatcacctccacatggttca
ccaaagaagaagacttcagacaagtcaaaacgagggagtcggaaaagattgactgatatt
aataaggattggggatttggaaaaagaacaatcatgaacatagagagagagaatgacagt
actggagatatggatcacgacagagtagtctcattttccagtgaaccattggtttgtagc
agtcaaagacaagcagttccagatgatactgctgaagcattggaccattcagatacaatt
tcaccggttcacaatataattgattccaaggtagagtctgtgaccaaacgaacagcagat
aatccttctgaagcaagtaacaatgcagcaacctccagttgcaaggctatttctccagga
cagttgccgcaaatcttcgatgaggaacatcttgttcctctacccaaagcacatgccagt
gctaaaagatcaagaaaatcatcagattctagctctaaaaccccctcaaaaaagataaaa
aaaggtcagagttcttgccttaaaacatcaccaagttgcagtaagaatacatgtgatcca
tctagatcagacacacaagatcaatctgtaactccactacgacttaaatctgagttgagc
gaagctattaatgagacacaagctatttcttcaatagacaatagctgcaacacctcttcg
aatagaggcgacgatggaaaaaaccaacatgcgacacagaaatctccgtgcacaccacga
tctacacctaaaagcaatctggtcggaagttgtgcgacaactccaatctctcctcttact
cccacgatgaagaaaaatcacaagggtgaaactccactacacatcgcttccataaagggg
gacattgcagcagttgagcagctcttggagaatggagctaatccaaacatcaaggacaat
gcaggatggacgcctttgcatgaagcctgtaaccatgggcacatgaaggttgtacagctg
ttactgcagtttggtgttcttgtgaacacaccaggatatgaaaatgattctcccttacat
gatgcagtaaagaatggacatgtgaatgttgttaagctgctcgtctcacatggagcttct
caagatgtgatcaatatctttggaatgcggcctaaggattatgcaaatgcagaagaactg
attgccgctctgcagcaatccccggaagatgaaaatccacttgttgagcagtgttttatg
tcatctgcaagccagagaagagatgaacctatcatgttgctgggaagtgggctccgtcca
gctgacaagaataaaatggacaaattaataaagcaactaaactttgggagttgtactgaa
tttagcagctcagtgacgcacattattgttcccaatgataatgctccctgtaccaagaag
tgtttgatggggatcatctctggctgctggttggtggatttgcagtgggtgactgcttgt
ctggagtgcaagggcagagtttctgaagaagcctatgagataaatagcatgactggtccc
aaacgtggacgtctcaatcgagagcggcagcttccaaagctgtttgatggctgccatttc
tatttcatgggcttgttcaaaagctgcaagagagaagatttagttcaaatggccaagact
ggtgggggccagatccttgcccggcaacccaagcctgatagtgacgtgactcagagcatc
aacactgtggcctaccatgcaacccctgggtccgatcagtcattctgtacacaatacatc
atctatgacaaagacagtgactataagcctaagaaaaccaggctggggaaagtgtggact
acccattctgcatggctgattaactgtgtgaaatcatttgaactgcttccagttgctgag
aactag
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