Lotus japonicus: Lj6g3v1946520.1
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Entry
Lj6g3v1946520.1 CDS
T04348
Symbol
Lj6g3v1946520.1
Name
(Kazusa) -
KO
K10683
BRCA1-associated RING domain protein 1
Organism
lja
Lotus japonicus
Pathway
lja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Lj6g3v1946520.1 (Lj6g3v1946520.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
Lj6g3v1946520.1 (Lj6g3v1946520.1)
04121 Ubiquitin system [BR:
lja04121
]
Lj6g3v1946520.1 (Lj6g3v1946520.1)
03036 Chromosome and associated proteins [BR:
lja03036
]
Lj6g3v1946520.1 (Lj6g3v1946520.1)
03400 DNA repair and recombination proteins [BR:
lja03400
]
Lj6g3v1946520.1 (Lj6g3v1946520.1)
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
Lj6g3v1946520.1 (Lj6g3v1946520.1)
Ubiquitin system [BR:
lja04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
Lj6g3v1946520.1 (Lj6g3v1946520.1)
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
Lj6g3v1946520.1 (Lj6g3v1946520.1)
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
Lj6g3v1946520.1 (Lj6g3v1946520.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-HC5HC2H
BRCT
BRCT_2
zf-HC5HC2H_2
RTT107_BRCT_5
Motif
LinkDB
All DBs
AA seq
614 aa
AA seq
DB search
MQEQIGEQQNAIDGVDVDPNMPLKVTMEQSSDNKHKSSNLGKSIRRGKTVCFNTSINPTP
QTTCTVSNNSGVLSDGELKMAKISRTSPSKQENEKHCPQELVGRHHLKRSGKQKLDYVQV
LAEDLSSTQSPTNEFAGSDSSLQMYSSEKASNSRQRKNKISRKSSSCSKESRSTKKLKLS
SDCISKTKTGEEIQPNESILQGPDAGVLSETSKEKHRPLMDERILRRCESHVKKYQCVFC
LLSEESEASGPMVHYFDGKPVPADYEGGSKVIHCHRSCTEWAPNVYFEDDNAINLEAEIS
RSRRIKCSFCGTKGAALGCYEKSCRKSFHVPCAKWTSQCRWDMENFVMLCPLHASSKLPN
ESSGSQERSKKGTGEGKSRGFKHDTKSQTRTAHGSYKKIILCCSALSMQEKDVVSEFERA
TKVTVLKNWDSSVTHIIAAVDENGACRRTLKVLLGILEGKWILNIDWIKACMKEMEPVDE
ESYEINLDIHGIRDGPRLGRLRVLNKQPKLFDGYKFYFMGDFMPSYKGFLQDIVIAAGGL
VLHRKPVLADHPHQTLIIYSLELPNKCNPSEKDTIFSRRRSDAEVLASSTGSKVASNTWI
LNSIAACKLQCLAQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagcagattggtgaacaacaaaacgcaattgatggagtggacgttgatccaaac
atgccattaaaagtcactatggagcaatcatcggacaataagcacaaatcttctaacctg
gggaagtctattagaaggggcaagacggtttgctttaataccagtataaatccaacacct
caaactacttgtacagtctccaataactcaggagttctaagtgatggtgaattgaagatg
gctaagatttcacgtacctcaccgtctaaacaagaaaatgagaagcattgtcctcaggag
cttgttggaagacaccacctgaaaagatctggaaaacaaaagctggactatgtgcaggta
ctagctgaagatttatcttcaacgcaaagcccaaccaatgagtttgctggttctgattca
tctctgcagatgtatagtagtgaaaaggcctctaatagcaggcagaggaaaaacaaaatt
tccagaaaatcttcatcttgcagtaaagaatcgaggagtactaaaaagttgaaactttcc
tctgattgtatctctaagactaaaactggtgaagaaattcaacctaatgaaagtattctg
caaggtccagatgccggtgttttgagtgaaacatcaaaagagaaacatcgtcctttgatg
gatgaaagaattttaaggagatgtgagagccatgttaagaagtaccaatgtgttttttgt
ctcttatcagaagaatcagaggcttctggaccaatggtgcattattttgatggcaagcct
gtacctgcagattatgaaggaggatctaaagtcatacattgtcacaggagctgtacagaa
tgggcccccaatgtatattttgaagatgataatgcaataaatcttgaagctgaaataagt
agaagtcgaaggatcaaatgtagtttttgtggaactaaaggggctgcactcggctgctat
gagaaaagttgccgtaagagttttcatgttccttgcgccaagtggacttctcaatgtcgc
tgggatatggaaaactttgtcatgttatgccctctacatgcttcctccaagttgcccaat
gaaagttcaggatcccaagaaaggagcaagaaaggcactggagagggtaaaagccgtggt
ttcaaacatgacactaaaagccaaactcggactgctcatggatcatacaagaaaatcata
ctgtgttgttctgctctatccatgcaggagaaggatgttgtttctgaatttgaaagagca
accaaagttacagttttgaaaaattgggattcaagcgtcacccatattatagcagcagta
gatgaaaatggggcatgcagaaggaccctcaaagtattattgggcatcctggagggaaaa
tggattctcaatattgattggatcaaggcttgcatgaaggaaatggaacctgttgatgag
gagtcttatgaaattaaccttgatatccatggaatcagggatggccctcggcttggaaga
cttagagttttgaacaagcaaccaaagctttttgatggctacaagttctatttcatggga
gattttatgccgtcatacaagggctttctgcaagatatcgtgatcgctgctggagggcta
gttctgcatagaaaaccagtgctagctgaccatcctcaccaaaccctcataatttacagt
cttgagcttcctaataaatgcaatccttcagaaaaggatacaattttcagcagaagacga
agtgatgcagaagttctggcaagttctacaggttcaaaggttgcaagtaatacatggatt
cttaattcaattgcagcctgcaagctgcaatgccttgctcaataa
DBGET
integrated database retrieval system
