Lethenteron reissneri (Far Eastern brook lamprey): 133342697
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Entry
133342697 CDS
T09663
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lrj01009
]
133342697 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133342697 (HDAC6)
04131 Membrane trafficking [BR:
lrj04131
]
133342697 (HDAC6)
03036 Chromosome and associated proteins [BR:
lrj03036
]
133342697 (HDAC6)
Enzymes [BR:
lrj01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
133342697 (HDAC6)
Protein phosphatases and associated proteins [BR:
lrj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133342697 (HDAC6)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
133342697 (HDAC6)
Membrane trafficking [BR:
lrj04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
133342697 (HDAC6)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
133342697 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
133342697
NCBI-ProteinID:
XP_061408006
LinkDB
All DBs
Position
15:complement(10715829..10750954)
Genome browser
AA seq
1347 aa
AA seq
DB search
MSAAGAGKMDHCPGRGREKPSSAGGKRRNRQKMSQESRKSDRIAQVKQDRMGRRMAQLDV
PQHVECAYGTGLVFDTRMEIVSCPWESHVECPERAKQVLASITRSGLLPRCSVVEPRMAS
VEELMFCHSQEYIRMMQSTAEMLDQERKSLSDTFDSVYLHKGSYDGALLAVGSVLRLVER
VLTGDLRNGFALVRPPGHHAQRDLANGYCIFNNVAIAAQYALSQHQLQRVLIVDWDVHHG
QGIQYTFQDDPRVLYFSVHRHEGGAFWPHLSEGDVTAVGRGIAKGFNINLPWSRTGMSDA
DYVTAFQQILMPVAYQFSPQLVLVSAGYDAALGDPKGEMCVSPPCFGLLTHMLMSLANGR
LCLALEGGYNLEATAAGVCATLHTLLGDPVTSTGGARQAKCSALEDIGRTLATQQKYWSC
LRCHGLAKSTSVSENDDDKENKEIDTDREKDPASTAETGVMTTDEKTEVTKSDATETPVA
AEAVVTEIGDVVVMGMVTMETRVTGLVYDKRMRDHHNMWDRFHPEQPDRISVMFSRHEDL
GLVGRCRMVTARLATEEELLTCHSVRHVNAMRETTSMKARDLHRCSADYNSVYLSPSSFD
SACLAAGAALSLVEAAMCGQVSNGVAIVRPPGHHAESDVACGFCLFNTVALAAKHAQSLA
RRKIRVLIVDWDVHHGNGTQHIFEDDPSVLYVSLHRYDGGRFFPCSEDANVDRVGTGPGK
GFNVNVPWPGPYMRNAEYLAAFTSTVLPIAYEFDPELVLVSAGFDAAQGDPLGLCMVTPD
CYAHMTHMLLGLANGRVLLFLEGGYNLTTIAECMAMCTRALLGDPTLALGPLEPPQAGAE
RVLTSVLHTHSPLWHNLHIPVPLTEASPEDGQRGDDLLTLTPAAVHAHEVHFDKQHPAAD
DSARSSASHSFTTSSLGDTGSLGSSNSASDFTDNSYFTADSPVGSTSTPHSASSPQDTTA
SPGGCASIRSLSGSPPRAMDSPDVSTPLSPPTSAGAASVSTSTPAGSRVSGANTPQDPLT
PIAADSPVLPPLRPRVPPEQSSAAAAGTAASVDELAEAMASWAPGLGSKAEQTGSSDGRP
PHVSTAKNGLVSSDGVGLSAGVGSRLDGAAVGGARPKTRLSDCMRQGQEEDSPMDASSPH
GGIHEDGSKSDRTGVCESEAVRGESNRAVCGGEAVCGESEAVCGESEAACGGETGGPCAI
PGKDEVASGIHEDDVGLAEASGWTLFVDCPQPPSLCYAVKPLSWCPHLDAVTAIPGGVVN
PSSPCVDCGDSSENWLCLVCYQAYCGRYVRGHMLQHSEKSGHALVLSFADLSAWCYSCDS
YVHHELLFPAKRAAYRSKFDEEMPGLP
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggcaggagctggcaaaatggatcattgtcctggcagaggtcgtgagaagcca
tcgtcggcgggtggcaagcggaggaacaggcaaaagatgtcacaggagagccggaagagt
gatcgtatagctcaagtcaagcaggacaggatgggaaggcgtatggcccagctggatgtg
ccacagcacgtggagtgtgcgtatgggacaggcctggtgttcgacacgcgcatggagata
gtctcctgcccctgggagagccacgttgagtgccccgagcgagcgaagcaagtgctggca
tccatcacgcgctctgggctgctgccccgctgctctgttgtggagcccagaatggcctca
gtggaggagctgatgttttgtcacagccaggagtacatacgcatgatgcaatccacagct
gaaatgttggatcaggagcggaagtccctgtcggatacattcgactcggtgtatctccac
aagggttcgtatgacggcgcactgctagcggtgggcagtgtgctgcggctggtggaacgc
gtgttgacgggggacctcagaaatgggtttgcacttgtgcgacctccagggcaccatgcc
cagagggacctggcaaacggttactgcattttcaacaatgtcgccatcgcagcccaatac
gcgctgtcccagcaccagctgcagagggtgctgattgtggattgggatgttcaccatgga
cagggaattcagtacaccttccaagatgatcccagggttctctacttctctgtgcaccgt
catgaagggggggctttctggccccacttgtcggagggtgacgtcacggctgtgggacgc
ggcatcgcgaagggcttcaacatcaacctgccctggtctcggacaggaatgtccgacgcg
gattacgtgaccgcctttcagcagatcctcatgccggtggcttatcagttcagtccgcag
ctggttctcgtatctgctggctatgatgcggctctcggagaccccaagggtgagatgtgc
gtgtcacctccgtgcttcggcctcctcacacacatgctcatgtcgctggctaacgggcgg
ctctgcctggctctcgagggcggctataacctggaagcgactgcggcgggggtgtgtgcc
accctgcacaccctcctgggagatcctgtcacctccacggggggtgcacgccaggccaag
tgcagtgccctggaggacattgggcgaacgctcgccactcagcagaagtactggtcgtgc
ctgcgctgccatggtttggcaaagtcaacatcagtctctgaaaatgatgatgacaaagaa
aacaaagagattgacacggacagggaaaaggaccccgcaagcaccgcagaaacgggcgtc
atgacgacagatgaaaagactgaagtcacgaaatccgacgccacggagacccccgtcgcg
gcggaggctgtcgtcacggaaataggagacgttgttgtcatggggatggtcaccatggag
acgcgcgtcaccgggttggtgtatgacaagcgcatgagggatcatcacaacatgtgggac
cgattccacccagagcagcccgaccgaatctccgtaatgttctcccggcacgaggatctg
ggattggtggggaggtgtcgcatggtgacagcccggctggccacagaggaggagctcctt
acttgccacagcgttcggcacgtgaacgcgatgcgggagacgacgagcatgaaggcgcgg
gatctgcaccggtgcagcgcggattacaactctgtctacctgagccccagctcgttcgac
agtgcctgcttggctgccggggcagcgctcagcctcgtggaggccgccatgtgtggccag
gtgagtaacggggtggcgatcgttcgtccccccggtcaccacgccgagagcgacgtcgcc
tgtggcttctgtctcttcaacacggtcgccctggcagccaaacacgcgcagagcctggcg
cgacgcaaaatacgggtgctcatcgtggactgggatgtgcaccacggcaatgggacccag
cacatattcgaggatgaccccagcgtgctctacgtgtcacttcaccggtacgacggaggg
cgcttctttccgtgctcggaggatgcaaatgtcgaccgagtgggcacggggcccggcaaa
ggcttcaacgtgaatgtgccgtggccggggccctacatgagaaacgccgagtacctggcc
gcgttcacgagcaccgtgttgcccatcgcttacgagttcgaccccgagctggtgctggtg
tcggcgggatttgacgcggcacagggcgatcccctgggcctctgcatggtgaccccggat
tgctacgcgcacatgacgcacatgctgctggggttggctaacggacgggtccttctcttc
ctggagggagggtacaacctcaccacgattgccgagtgcatggccatgtgcacccgcgcg
ctgctgggagaccccacgttggccctcgggccgctggagccgccccaagcgggcgccgag
agggtgctcaccagtgtcctgcacacgcacagcccgctctggcacaacctgcacatacca
gtgccactcaccgaggcttcccccgaggatggccagcgtggggacgacctcttgaccctg
acacccgcggccgtgcacgcgcacgaggtgcacttcgacaagcagcacccggccgccgac
gacagcgcacggagctccgcgtcccacagcttcacgaccagctcgctcggcgacacgggg
agcctcgggagttcaaactcggcgagcgatttcacggacaactcgtatttcacggcggac
agccccgtgggttctacgtcgacgccgcattccgcgagcagcccgcaggacaccacggcc
agccctgggggttgcgcgtcgatccggagcctcagcggtagcccgcctcgtgccatggac
agccctgacgtttctacgccgctttccccaccgacatctgcgggcgctgcgagcgtgtct
acgtcgacccccgcgggcagcagggtgagcggagcgaacaccccacaagatcctctgaca
ccgattgctgcggatagcccagtactgccccctctgcgaccgcgggtaccgcctgaacag
tcttcggcagcagcggctgggacagcggcatccgtggatgaactggcggaggcaatggcc
tcttgggcgcccggtctgggctcgaaggctgagcagacaggaagtagtgacgggcggcct
ccgcacgtcagcaccgccaagaatggccttgtttcgtcggacggcgtggggctgtctgct
ggggtggggtctcgtttggatggcgcagcggtgggtggggccagacccaagacgcgactc
tctgattgcatgcggcagggtcaggaagaagactcacccatggatgcgtcgtcaccgcac
ggaggcatccacgaggatgggagcaagagtgatcgtacaggagtgtgtgagagcgaggct
gtgcgtggtgagagcaatcgggctgtgtgtggcggcgaggctgtgtgcggcgagagtgag
gccgtgtgtggtgagagtgaggctgcgtgtggcggtgagactggaggaccgtgtgctata
cccgggaaggatgaagtggcctccggaatacatgaagatgacgtgggtttggcggaggcc
agcggctggacgctttttgttgactgccctcagcccccgtcgctgtgctacgcggtgaag
ccgctgtcgtggtgtccccacctggatgccgtgacggccatccccggcggggttgtgaat
ccctcctccccgtgcgtcgattgcggggactcgtcggagaactggctgtgcctcgtctgc
tatcaggcatattgcgggaggtacgtccgcgggcacatgctgcagcacagcgagaagagc
ggacacgcgctcgtgctaagcttcgcggacttgtctgcctggtgctactcctgcgactca
tacgtgcaccacgagctgctgttcccagccaagcgggccgcctatcgatccaagtttgac
gaggagatgccgggcctgccctga
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integrated database retrieval system
