Lethenteron reissneri (Far Eastern brook lamprey): 133349627
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Entry
133349627 CDS
T09663
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133349627 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133349627 (BARD1)
04121 Ubiquitin system [BR:
lrj04121
]
133349627 (BARD1)
03036 Chromosome and associated proteins [BR:
lrj03036
]
133349627 (BARD1)
03400 DNA repair and recombination proteins [BR:
lrj03400
]
133349627 (BARD1)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133349627 (BARD1)
Ubiquitin system [BR:
lrj04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
133349627 (BARD1)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
133349627 (BARD1)
DNA repair and recombination proteins [BR:
lrj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
133349627 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
zf-RING_6
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-C3HC4_2
zf-RING_5
RTT107_BRCT_5
zf-C3HC4
zf-RING_10
PTCB-BRCT
zf-RING_2
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
133349627
NCBI-ProteinID:
XP_061419198
LinkDB
All DBs
Position
31:817879..835480
Genome browser
AA seq
738 aa
AA seq
DB search
MMESTTLSWGATAGALAHLEKLLGCALCGDTLCEPCSLGGCEHVFCRGCVSDHVGNSCPI
CQAPSWVRDLQANRQLAGMVTLCRQLRELLATDTPPSDKACSLSLQQPGPREKDVKPSPE
IIKTPELTKKANVVSMQFSPRSRQVRCRIKKPTQPLEDKENAKTSAADGSYASVYDFQSS
QSSPDQTPIHPPQPRKLKTIRKRLSAINKSWGFGKKRKKNTSESTDVASKIEVSQKDPAD
NRLISFGPEQVFLIDSSNVTCSAVSASATPSPDATSAVAAGSTIFQSLWSPTMSGESVES
NPSGGNSESEKTTTDSALGATSKRALEEPSGASPSKKAKSGWNGSILQKSPPGVGGRRKA
GGSVAGSPGTSEILKKNRKGETPLHVAAIKGDIDGVEHLLKNGADPNIKDNAGWTPLHEA
CNHGHVRVVELLLDHGAFINAPGYENDSPLHDAVSNGHTHVAGLLVGRGADQHALNMLGL
QPLDYAKSEEMRTVFTSQPFEPSTLPFSLPASLPTGPIGPMVLLDSRLTEHQKESLKRVA
TTLGGRVVSTFNNCATHVIVDSTMQIPRTMKCFLAILNGCWIIGFQWVQACLARHERVPE
QDFEVRGRDGSLPCRGPERGRLNKLQQLPGLFDGCHFFLGGPFDEPCRSDLAEMVRVGGG
HMLSRQPKPDSDVTQSVRRAAYHARRHSDQEFCTHYVVYDGAWLGGRSGVSRLGKVWTVP
SGWLVECVLAFELLPFDV
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgatggagtcaacgaccctctcctggggagccacggcgggcgcgctcgctcacctcgag
aagctcttgggatgcgcactctgtggagacacgctgtgtgagccgtgcagcttgggaggc
tgtgaacacgttttctgccggggttgcgtgagcgatcatgtcggcaacagctgccccatc
tgtcaggcgccgtcctgggtcagagatctgcaggcaaatcggcagcttgccggcatggtg
accctgtgccggcagctgcgtgagctcctggcaaccgacactccaccctctgacaaagcg
tgttcactctccctacagcaaccagggccacgagagaaagatgtcaagccatcacctgaa
attataaaaacgccggaactgaccaaaaaagccaatgtggtcagcatgcagttcagtccc
cgcagtaggcaggtgcgttgccgcatcaaaaagcccactcagccacttgaggacaaggag
aatgccaagaccagtgctgcagatggaagttacgcatcggtgtatgacttccaatcctcc
cagtcgtctcctgatcagacaccgattcatccaccacagcccaggaaactaaaaacgata
cggaagaggctatcggctattaacaagtcatggggttttggcaaaaagcggaagaagaat
acaagcgagagcacagatgttgccagtaagatagaagtttcacaaaaagatccggctgac
aaccgcctcatctcgtttggccccgagcaagtgtttctaatcgatagcagtaatgtgaca
tgtagtgctgtaagcgcgagtgccactccatccccggacgctaccagtgccgtggccgct
ggaagcacaattttccagtcattgtggagcccaacgatgtcaggagagtcggtcgagagc
aacccatcaggcggaaactctgagtcagagaagacgacaactgactctgccttgggagcg
acgagcaagcgggccttggaggagccgagcggtgcaagtccttccaagaaagcaaagagt
ggctggaatggaagcattttgcaaaagtcgccccctggcgttggcgggaggcggaaggcc
ggggggagtgtggctggctctcccgggacctcggaaatcctgaagaagaaccgaaagggc
gagacaccgctgcacgtcgctgccatcaagggtgatattgatggagttgaacaccttcta
aagaatggtgcagatccaaacatcaaggacaatgctggatggacccctctgcacgaggcg
tgcaaccacggacacgtgcgggtggtggagctgctgctggaccatggcgcgttcatcaat
gctccgggctacgagaacgactccccgctgcacgacgccgtctccaacgggcacacgcac
gtggctggcctgctcgtgggtcgcggggccgaccagcacgcgctgaacatgctgggcttg
caaccgctggactatgccaagagtgaggagatgcgcacggtgttcaccagccagccgttc
gagcccagcacgctgcccttcagtctgcccgcgagccttccgactggtcccattggcccc
atggttttgctggacagcagactgaccgagcatcagaaggagtccctgaagagagttgcc
acaacactgggaggacgagtcgtctccacgttcaacaactgtgcaactcacgtcatcgtc
gactccacaatgcaaattccccgcaccatgaaatgcttcttggccatcctcaacggctgc
tggattatcggcttccagtgggtgcaagcctgtctggcgaggcatgaacgcgtgccagag
caggacttcgaagtgaggggacgtgacggctccctgccgtgtcgtggtccggagagaggg
agactcaacaaacttcagcagcttccaggcctcttcgacggttgccacttcttcctgggt
ggccccttcgacgagccctgccgctccgacttggcagagatggtgcgcgtgggtggcggg
cacatgctgtcgcggcagccgaagcccgacagcgacgtgacgcagagcgtgcgccgcgcc
gcctaccacgcgcgccgccactcggaccaggagttctgcacgcactacgtggtgtatgac
ggcgcgtggctgggcggccgcagcggagtgtcgcggctcggcaaagtgtggaccgtcccg
tctgggtggttggtggagtgcgtgctcgcgttcgagctcttgccgtttgacgtgtag
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